Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02380 ATGGAACAAGACAACGACGACAACAACAAGAACGACACCGGGGATAATGAAATCTTTGTATCTAAATTAAAAGGAGAAACTTCTTTTGATTTTTCACCCAAAAAAAGCATAGCTGAGAGAAGGGGTTTCAATAACAATGTTGCAAAGATCAACACAAGAATTTCTCATTTTGGTGCAACAACTTCTTTGGTTTCTCCTGCAGCTCAATCAGCACGTCTCACAATACCGCCTGGAATTAGTCCAACTGCTTTGCTTGAATCTCCAATCATGCTTTCTAATCCTATGGTCATGCCGTCTCCAACCACCGGGAGTTTTGCCATGCTTCCACCTCTAACTGGTGAAAGTTCAATGCTCACTTTTGTCACAAATGAACTAAGGAAATTGGATGTGCCTACTGCCTCTGACATTTCTTCCTCTTTCAAATTCAAGCCTCAAGCCAGTTTGGATCCTAATTATTTGTCTCCTTATTGTGATTCTCAAAATCAGGTTTCTAGTAATTGCCACATGATGAGTCAGGGACATAGAGACAACCAAATGCTTTTTCAAGATCAACAAGTGTTATATTTTTCAAATGACAATTTCCACATTGATGTGGAAATGGCAGATGATGTGATCATTGATGCTAATAATAATAATAATGTTGACCTGCCAATATCTTGTTCTGAAGAAACTAGCATTGAAAGCACTTTGCTTGAAAATTCTATCAATGATGATGATATTGGACAACAATCTGTTTTAGAAGATGAGCATAAAGAGATGACTCATGCAACAGGAGCAAAAACCTCAGAGGATGGTTATAATTGGAGAAAGTATGGACAAAAACAGGTCAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTAGCAAGACTAATTGTCAGGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCAAATAACAGAAATTATTTACAGGGGTAATCATAACCATGGAAAACCACATTCTGGTCGTCGTGGATCAACGCCTTCAAATGATGATGAGGTATCAGAAATTGTTGAAACCAATGAAACATGTGATAGAGCTGATGTTGATTCAGTATGGGAAAATATTGAGTCGCGAGGAAAACACAGTTTAGAGTCGAAGCCTGTTGTGACTGAGCTTTCAAATTCTACAAAGAGATTTAGATATCTTGGTATGCCGGAATCAGACGATGCTCCAGAGCATTCTTCCGCACATGCTAATCACGGTGGTGATGAAGATGGAGCTACTCGAGCAGTTTTACAACTTCGAGGTGATGATGCTGAAGAAGCTGAATCAGAATCAAAAAGAAGGAAGAACGAGAGCTATCCAGTTGAAACAATGGTACCATCGAAAGCTGTTCGTGAGCCACGAGTGGTAGTTCAAGTTGAGAGTGAAGTGGACATACTCGATGATGGTTACCGCTGGCGAAAATATGGACAGAAGGTTGTCAAAGGGAATCCAAACCCAAGGAGTTACTACAAATGCACAACTGTTGGATGTATTGTAAGGAAACATGTGGAAAGGGCATCACACAATCTAAAAATAGTGATTACTACTTATGAGGGGAAACATAATCATGATGTTCCCAAGCCAAGAAATATTGTTGCTTTGCTTTCTAGTGTTGCTAATGTGCAAGCCTCTGGTATCCCGAAGTCTGAAACTCATCAAACTCTTGCACCTCATTTTGATAGAAATGAGTTTCTGAGGTCAAGTTTAATGGGAAGTTTTAGTAATGATATGAAGTTTGGATCTTCATCCATATCCCAAATGAAGTATTCTTCCTTGAATAGTATCATACCTTATGGCAGGAATCCTGACCATGTTGTTGCGCCTCAAGTCGGACCAATTTTCCCCGAGTTTCCAACGCCGATACCAATGAATCTTCCTTTCAACTATGCACAACCAATGAGTTCTTTCCAGTCTTACATTTCAGGTCAACTTGGGATGGACATTGATACAGGGTTCCAGGCCTAA 1959 0.3961 MEQDNDDNNKNDTGDNEIFVSKLKGETSFDFSPKKSIAERRGFNNNVAKINTRISHFGATTSLVSPAAQSARLTIPPGISPTALLESPIMLSNPMVMPSPTTGSFAMLPPLTGESSMLTFVTNELRKLDVPTASDISSSFKFKPQASLDPNYLSPYCDSQNQVSSNCHMMSQGHRDNQMLFQDQQVLYFSNDNFHIDVEMADDVIIDANNNNNVDLPISCSEETSIESTLLENSINDDDIGQQSVLEDEHKEMTHATGAKTSEDGYNWRKYGQKQVKGSEYPRSYYKCSKTNCQVKKKVERSHDGQITEIIYRGNHNHGKPHSGRRGSTPSNDDEVSEIVETNETCDRADVDSVWENIESRGKHSLESKPVVTELSNSTKRFRYLGMPESDDAPEHSSAHANHGGDEDGATRAVLQLRGDDAEEAESESKRRKNESYPVETMVPSKAVREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCIVRKHVERASHNLKIVITTYEGKHNHDVPKPRNIVALLSSVANVQASGIPKSETHQTLAPHFDRNEFLRSSLMGSFSNDMKFGSSSISQMKYSSLNSIIPYGRNPDHVVAPQVGPIFPEFPTPIPMNLPFNYAQPMSSFQSYISGQLGMDIDTGFQA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02380 652 Gene3D WRKY domain 451 517 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 SMART WRKY_cls 464 523 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 SMART WRKY_cls 262 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 SUPERFAMILY WRKY DNA-binding domain 258 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 MobiDBLite consensus disorder prediction 420 444 - -
Trre13g02380 652 SUPERFAMILY WRKY DNA-binding domain 457 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 ProSiteProfiles WRKY domain profile. 459 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 Gene3D WRKY domain 248 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 MobiDBLite consensus disorder prediction 420 437 - -
Trre13g02380 652 Pfam WRKY DNA -binding domain 263 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 Pfam WRKY DNA -binding domain 465 521 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 ProSiteProfiles WRKY domain profile. 257 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02380 652 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 549 IPR044810 GO:0003700
Trre13g02380 652 FunFam WRKY transcription factor 57 450 524 - -
Trre13g02380 652 MobiDBLite consensus disorder prediction 312 337 - -
Trre13g02380 652 FunFam WRKY transcription factor 249 322 - -
Trre13g02380 652 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02380 Trre-Chr13 21421998 21425602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02380 1 527 WRKY Transcription Factor Family AT5G56270 38.869 1.08e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g02380 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02380 K18835 - gmx:100813723 649.818