Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02379 ATGATTAACACAAAACGTTTTCGTTTTAGTGGTTTTGGTGCAACAAACTCTTTGGTTTCTTCTGCAGCTCAATCACCATGTTTCACAATACCATCTGGAATTAGTCCAACTTCATTGCTTGATTCCCCAATCATGCTTCCTAATTCTCAGGCCATGCCATCTCCCACCACCGGGAGTTTCGCCATGCTTCCGCCTCGAATTGATGAAGGATCAATGCTCCCTTCTATCAGACATGAACAAAGAAAAGAGGATGCTTCTTTCAAATTCAAGCCTCAAGTCAATTTGGGTCCTAATTCTTTGTCTCCCTATCATGCTTCTCTAAACCAGGTTTCTAATAAATGGCGCATGATGAATGAAGCACATGAAGACATCAAAATGCTTGTTCAAGGTCAAAACATGTTAGATTTTTCAGTCTCAAAAGATTTTGCAAACAACAATTTAGCTAGAAATATTGGAGTGCATTTCGACAATGATGTGAAAATGGTAAATGATATGTTCTTTGATACCAGTAATGTTGACGATAAAAGCACTCTGCGAGAAAATTTGAACCATGATGAGGATATTCGACGACAACTTCTCTTAGAAGAAGAACAGAAAGAGATGTCTCATGCAACAGAAGGAAAAACCGCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTACTCAGCCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCAAGTAATAGAAATTATTTACAGGGGAAATCACAACCATGCAATACCACATTCTAGTCGTCGAGGATCAGCGCCTTCAAATGATGAAATGTCAGATATTGTTGAAGCCAATGAAACCTGGGATAGAGATGATGTTGAATCAGTATGGGGAAAAGATGCAAAACACGATCCAGAGTGGAAGCTTGATGGTCAAGAAAGAGATCCTAGAAAGAGATTTAGATCTCTAGGTATGTATGAATTAGACAAGGCTGAAGAGCGTTATTCCACACTTGCTAATCACTATGGTGATAAAGGTAGAGCCACTCAAGCAGTTTTACGACTTGAAGACGATGCTGAATCAAAATTAAAAAGAAGAAAGAAGGAGAGCTATCCGTGTGAAACAATGGTGCCTTCGAGGGTTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAGTGGACATACTTGATGATGGTTATCGTTGGAGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGCTACTACAAATGCACAAGTGCTAGATGTACCGTAAGAAAACATGTTGAAAGGGCTTCACATAATCTCAAATATGTTATTACTGCTTATGAGGGAAAACATAACCATGAGGTTCCAACTGCAAGAAATAACAATCAGATAAGCTCAAATGACATTGCTTTACCGTATAGTACTGGTGTTAATATGCAAGTCTCTAGTATCCCCAAGTTTGATAGAAAACCAAATTTTAGCAATGAGTTTATGAGATCAAATTTGATGGGAAGTTTCAGTAATGATATCAACTTTGGACCATCTTCCATGTCCCAAATGAAGTATTCTTCCTTGAATAATATCAACCCGTATGGCGCTTATGGAACAAGTCTTGACAGCGGTGTTGCGCCTCAAGCCGAACCTATTGCCTCAATTTTCCCCGAGTTTCCAATGCTGCTACCATTGAATCTTTATATGCTGAAGGATGAATCTTTATATGCTGCACGATCAACATTGATTTATCAAAGTTTCATGCAAAATTTCCCTTCATAA 1794 0.3885 MINTKRFRFSGFGATNSLVSSAAQSPCFTIPSGISPTSLLDSPIMLPNSQAMPSPTTGSFAMLPPRIDEGSMLPSIRHEQRKEDASFKFKPQVNLGPNSLSPYHASLNQVSNKWRMMNEAHEDIKMLVQGQNMLDFSVSKDFANNNLARNIGVHFDNDVKMVNDMFFDTSNVDDKSTLRENLNHDEDIRRQLLLEEEQKEMSHATEGKTAEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQVIEIIYRGNHNHAIPHSSRRGSAPSNDEMSDIVEANETWDRDDVESVWGKDAKHDPEWKLDGQERDPRKRFRSLGMYELDKAEERYSTLANHYGDKGRATQAVLRLEDDAESKLKRRKKESYPCETMVPSRVVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSARCTVRKHVERASHNLKYVITAYEGKHNHEVPTARNNNQISSNDIALPYSTGVNMQVSSIPKFDRKPNFSNEFMRSNLMGSFSNDINFGPSSMSQMKYSSLNNINPYGAYGTSLDSGVAPQAEPIASIFPEFPMLLPLNLYMLKDESLYAARSTLIYQSFMQNFPS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02379 597 Gene3D WRKY domain 196 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 SUPERFAMILY WRKY DNA-binding domain 396 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 491 IPR044810 GO:0003700
Trre13g02379 597 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 SMART WRKY_cls 210 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 Gene3D WRKY domain 390 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 FunFam WRKY transcription factor 197 270 - -
Trre13g02379 597 Pfam WRKY DNA -binding domain 404 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 Pfam WRKY DNA -binding domain 211 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 SUPERFAMILY WRKY DNA-binding domain 206 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02379 597 FunFam WRKY transcription factor 57 389 463 - -
Trre13g02379 597 ProSiteProfiles WRKY domain profile. 205 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02379 Trre-Chr13 21414595 21417904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02379 2 466 WRKY Transcription Factor Family AT5G56270 40.323 3.92e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g02379 WRKY 9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02379 K18835 - gmx:100813723 608.601