Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02378 ATGGAACAAGACAACAATAACATCAACAACAATAATAACAATGAAAATAAAAATGGAGGAGCCTTTTTAAAATTTTCACCCAAAAGAAGCATAGCTGAAAGAAGAGGTTTCAATAAAAATACAGCAATGATTAACACAAAACGTTTTCGTTTTAGTGGTTTTGGTGCAACAAACTCTTTGGTTTCTTCTGCAGCTCAATCACCATGTTTCACAATACCATCTGGAATTAGTCCAACTTCATTGCTTGATTCCCCAATCATGCTTCCTAATTCTCAGGCCATGCCATCTCCCACCACCGGGAGTTTCGCCATGCTTCCGCCTCGAATTGATGAAGGATCAATGCTCCCTTCTATCAGACATGAACAAAGAAAAGAGGATGCTTCTTTCAAATTCAAGCCTCAAGTCAATTTGGGTCCTAATTCTTTGTCTCCCTATCATGCTTCTCTAAACCAGGTTTCTAATAAATGGCGCATGATGAATGAAGCACATGAAGACATCAAAATGCTTGTTCAAGGTCAAAACATGTTAGATTTTTCAGTCTCAAAAGATTTTGCAAACAACAATTTAGCTAGAAATATTGGAGTGCATTTCGACAATGATGTGAAAATGGTAAATGATATGTTCTTTGATACCAGTAATGTTGACGATAAAAGCACTCTGCGAGAAAATTTGAACCATGATGAGGATATTCGACGACAACTTCTCTTAGAAGAAGAACAGAAAGAGATGTCTCATGCAACAGAAGGAAAAACCGCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTACTCAGCCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCAAGTAATAGAAATTATTTACAGGGGAAATCACAACCATGCAATACCACATTCTAGTCGTCGAGGATCAGCGCCTTCAAATGATGAAATGTCAGATATTGTTGAAGCCAATGAAACCTGGGATAGAGATGATGTTGAATCAGTATGGGGAAAAGATGCAAAACACGATCCAGAGTGGAAGCTTGATGGTCAAGAAAGAGATCCTAGAAAGAGATTTAGATCTCTAGGTATGTATGAATTAGACAAGGCTGAAGAGCGTTATTCCACACTTGCTAATCACTATGGTGATAAAGGTAGAGCCACTCAAGCAGTTTTACGACTTGAAGACGATGCTGAATCAAAATTAAAAAGAAGAAAGAAGGAGAGCTATCCGTGTGAAACAATGGTGCCTTCGAGGGTTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAGTGGACATACTTGATGATGGTTATCGTTGGAGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGCTACTACAAATGCACAAGTGCTAGATGTACCGTAAGAAAACATGTTGAAAGGGCTTCACATAATCTCAAATATGTTATTACTGCTTATGAGGGAAAACATAACCATGAGGTTCCAACTGCAAGAAATAACAATCAGATAAGCTCAAATGACATTGCTTTACCGTATAGTACTGGTGTTAATATGCAAGTCTCTAGTATCCCCAAGTTTGATAGAAAACCAAATTTTAGCAATGAGTTTATGAGATCAAATTTGATGGGAAGTTTCAGTAATGATATCAACTTTGGACCATCTTCCATGTCCCAAATGAAGTATTCTTCCTTGAATAATATCAACCCGTATGGCGCTTATGGAACAAGTCTTGACAGCGGTGTTGCGCCTCAAGCCGAACCTATTGCCTCAATTTTCCCCGAGTTTCCAATGCTGCTACCATTGAATCTTTATATGCTGAAGGATGAATCTTTATATGCTGCACGATCAACATTGATTTATCAAAGTTTCATGCAAAATTTCCCTTCATAA 1920 0.3823 MEQDNNNINNNNNNENKNGGAFLKFSPKRSIAERRGFNKNTAMINTKRFRFSGFGATNSLVSSAAQSPCFTIPSGISPTSLLDSPIMLPNSQAMPSPTTGSFAMLPPRIDEGSMLPSIRHEQRKEDASFKFKPQVNLGPNSLSPYHASLNQVSNKWRMMNEAHEDIKMLVQGQNMLDFSVSKDFANNNLARNIGVHFDNDVKMVNDMFFDTSNVDDKSTLRENLNHDEDIRRQLLLEEEQKEMSHATEGKTAEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQVIEIIYRGNHNHAIPHSSRRGSAPSNDEMSDIVEANETWDRDDVESVWGKDAKHDPEWKLDGQERDPRKRFRSLGMYELDKAEERYSTLANHYGDKGRATQAVLRLEDDAESKLKRRKKESYPCETMVPSRVVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSARCTVRKHVERASHNLKYVITAYEGKHNHEVPTARNNNQISSNDIALPYSTGVNMQVSSIPKFDRKPNFSNEFMRSNLMGSFSNDINFGPSSMSQMKYSSLNNINPYGAYGTSLDSGVAPQAEPIASIFPEFPMLLPLNLYMLKDESLYAARSTLIYQSFMQNFPS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02378 639 Gene3D WRKY domain 432 498 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 Gene3D WRKY domain 238 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 FunFam WRKY transcription factor 239 312 - -
Trre13g02378 639 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g02378 639 SMART WRKY_cls 252 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 SMART WRKY_cls 445 504 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g02378 639 FunFam WRKY transcription factor 57 431 505 - -
Trre13g02378 639 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 533 IPR044810 GO:0003700
Trre13g02378 639 Pfam WRKY DNA -binding domain 446 503 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 Pfam WRKY DNA -binding domain 253 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 ProSiteProfiles WRKY domain profile. 440 505 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 SUPERFAMILY WRKY DNA-binding domain 248 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 SUPERFAMILY WRKY DNA-binding domain 438 505 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02378 639 ProSiteProfiles WRKY domain profile. 247 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02378 Trre-Chr13 21414469 21417904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02378 31 508 WRKY Transcription Factor Family AT5G56270 40.472 1.18e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g02378 WRKY 9.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02378 K18835 - gmx:100813723 635.18