Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02361 ATGAGCTCCAAGGAGAAACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAACATTGCGGCGCCTCTGGACCCTGCAGCATTTGCGGATGCAGTGGTCCAGATTTACTTGGATAATGCTGGTGATTTGGAACTTATTGCAAAAAGCATTGAATCTTCTGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTATTTTCACTGGGGGTCGCACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTATTCCATAATAGAGTATGAGGCAAAACGTGAAGTCATTTTACCATCTGTGATCTACATACAGAAAGTTTTGCGTAGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTTCAGTCGTTGGAGCTTTTTGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCTTTTTCCCAGAAGTTATCTGGTCTCCCACCAGAGACTGTGTTCCAACCACTTCTTAAAGACAACCTTGTTGCCAAAGGGCTAGTTCTGACATTTATAACCGACTTCTTTAAGGTGTATTTGAATGACAACAGCCTTGATGATCTTATTTCAATCCTGAAACGTGGGAAAATAGAGGACAATCTTTTGGTCTTCTTCCCCCCTGCAAAAAGAACTAATGAGTCTTTTTCTGAGCATTTCAGCAAGGAAGGACTCACTGCCTTGGTGGAGTATAATGAAAAGAAAATATTCGAGGTGACGCTGAAGGAAATGAAGTCTGCTTTAACAACACAGATAACAGAGGAGGCTGATATATCTGAAGTTATTGAGACTGTGAAGCTTCGGGTCAGAGATGCTAAGTTGCCAGAAACTGAGATTGTGCGGATCTTATGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGTAAAAATCAGCAACAAAATGCAAATGCTGCCCTGCGCAAGGTAAAAACTTGGGCAGAACTGTTGAATACCTTCTGCACCAGTGGAAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAACTGTTCCCTGAGATTATTAGATCTCTCTATGACCAAGATGTGCTTGCTGAAGATACCATTCTTCATTGGTTCCGTAAAGGAACAAATCCCAAAGGAAGGCAAACCTTTGTGAAGGCACTGGAACCCTTTGTTAATTGGCTGGAAGAGGCTGAAGAAGAGGAGTGA 1236 0.4304 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVIFTGGRTQPGTTKPDEGERHPYSIIEYEAKREVILPSVIYIQKVLRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKVYLNDNSLDDLISILKRGKIEDNLLVFFPPAKRTNESFSEHFSKEGLTALVEYNEKKIFEVTLKEMKSALTTQITEEADISEVIETVKLRVRDAKLPETEIVRILWDVLMDAVQWSGKNQQQNANAALRKVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02361 411 Coils Coil 121 141 - -
Trre13g02361 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Trre13g02361 411 FunFam ARM repeat superfamily protein 243 411 - -
Trre13g02361 411 Gene3D - 253 407 - -
Trre13g02361 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Trre13g02361 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
Trre13g02361 411 SMART 542_3 325 410 IPR003307 GO:0005515
Trre13g02361 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Trre13g02361 411 CDD W2_eIF5C_like 217 404 IPR043510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02361 Trre-Chr13 21326296 21330153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02361 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 1.60e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02361 - - rcu:8274281 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02361 13 21326296 21330153 Trre13g02361 13 21326296 21330153 ECH