Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02357 ATGAACAAGTGTCTAGGACCACTCTGCATACTCTTGTTGGTTCTCTTAGTTGAAGCTTCCCCTCATGGATCTCTCATCACACAACTCCCTGGTTTTAATGGCAAATTCCTCTCAAACCATTACTCAGGGTATATAACTATTGATGGAAATGCTGAGAATGGGAAGAACTTGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCAAGTAAGGATCCAGTTGTTCTATGGTTGAATGGTGGACCTGGTTGTTCTAGCTTTGATGGCTTTGTTTATGAACATGGGCCATTCAATTTCGAGGCTGCAAAATCAAAAGGGAACCTACCCACTTTGCATAACAATCCTTACAGCTGGTCCAAGGTTTCCAATATTATATATTTGGATTCACCCACTGGTGTTGGCTTGTCTTATTCAAAGAACATAACAAAATACTCAACTGGGGACATACAAACTGCTTCTGATACCCATGCTTTTCTCTTAAAGTGGTTTGAGCAATTTCCAGAATTCCAGGCTAATCCATTTTATGTTGCTGGGGAGTCTTATGCTGGAATTTACGTACCCAATTTAGTTTTTGAAATTGCTAAAGGAATCCGGAGTCTTACAAAGCCCGTGATCAATTTAAAGGGTTACTTGGTGGGAAATGGTGTCACGGGCTCAAAATTTGACGAAAATGCTTTTATCCCATTTGTGCATGGAATGGGCCTCATATCCGACACTATTTATGAGAATGTACAAGTTACTTGCAAAGAAAATTACTACTACAAATCTAATACCGAGGATGATGCATGCTCTAAGAACATGGACAAAGTTAATAGGGCTATTGGTGGGCTTAATGTGTACAATATATTAGAGGCATGCTATCATGACCCTCAAGTTGAAGGAAACAAAAGCTCTAAGTTGCCATTGAGTTTCCAAAATTTAGGGAAAACAGAAAGACCTCTCCCAGTGAGAAAGAGGATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCAGTCAGAGATGGCCCTGTTACCTTATGGCCTCAATTAATGGCTGATAATTTGAAACATGCCCCTTGTGTTAGTGATGAAGTAGCAATCGCGTGGCTAAACAACGTTGAAGTCAGGAAAGCCATTCATGTTAACCAGGCAAGTGATAGGTGGGAATTATGCACAGATAGAATAAGTTACAATCATAATGCTGGAAGCATGATTCCTTACCACAATAATCTAACAAGAATGGGATATAGAGCACTTATTTTCAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACAAGATCTTTGGGATACAAAATTGTGGATGAGTGGAGATCATGGATCTCTAATGACCAAGTTGCTGGGTACTTACAAGCATACGAGAACAACCTTACCTTTCTCACAGTTAAGGGAGCTGGGCACACTGTACCGGAATATAAGCCACGGGAGGCACTGGATTTTTACAGTCGTTGGTTGGAAGGAAAACCAATATAA 1482 0.4035 MNKCLGPLCILLLVLLVEASPHGSLITQLPGFNGKFLSNHYSGYITIDGNAENGKNLFYYFVSSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKGNLPTLHNNPYSWSKVSNIIYLDSPTGVGLSYSKNITKYSTGDIQTASDTHAFLLKWFEQFPEFQANPFYVAGESYAGIYVPNLVFEIAKGIRSLTKPVINLKGYLVGNGVTGSKFDENAFIPFVHGMGLISDTIYENVQVTCKENYYYKSNTEDDACSKNMDKVNRAIGGLNVYNILEACYHDPQVEGNKSSKLPLSFQNLGKTERPLPVRKRMFGRAWPFRAPVRDGPVTLWPQLMADNLKHAPCVSDEVAIAWLNNVEVRKAIHVNQASDRWELCTDRISYNHNAGSMIPYHNNLTRMGYRALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRSWISNDQVAGYLQAYENNLTFLTVKGAGHTVPEYKPREALDFYSRWLEGKPI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02357 493 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Trre13g02357 493 Gene3D - 351 387 - -
Trre13g02357 493 FunFam Carboxypeptidase 19 306 - -
Trre13g02357 493 Pfam Serine carboxypeptidase 30 490 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 SUPERFAMILY alpha/beta-Hydrolases 26 492 IPR029058 -
Trre13g02357 493 Gene3D - 395 490 - -
Trre13g02357 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 460 477 IPR033124 GO:0004185
Trre13g02357 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 477 IPR001563 GO:0004185|GO:0006508
Trre13g02357 493 FunFam Carboxypeptidase 395 490 - -
Trre13g02357 493 Gene3D alpha/beta hydrolase 19 319 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02357 Trre-Chr13 21293657 21300755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02357 356 493 Calmodulin-binding Proteins AT2G22960 48.201 4.69e-42 146