Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02335 ATGGCTTCTATGAACTTGTTGGGTTTCTCTTTGTCACCACAAGAACAACACCCTTCAAGTCAAGATCAAACGGTGGCTTCACGTTTTGGCTTCAACCCTAATGATGGTTCTGATGTTCAACAAGGCTTTGATCTCTCTTCTCATCACTCAACTTCTCATCATCATTCACTTAACAACCTTTCTCACCCTTTTTCCATTTATGAAGCTTACCACACCAATAACAACATTCAAACCACTCAAGATTGGAAGGAGAACTACAACCAAAACCTACTATTGGGAGCATCATGCATTAACCAAAATGTGAATCAACAAGTACAACCAAAGCTAGAAAACTTCCTCGGCGGAAACTCTTTCACCGACCACCATGAATACGGTGGTAACAACTCATACTCTTCATTGCACCTTTCGGCTACTCATCCAGAAGGTGCAACAAACTGTGGTGTCGGTGGTGGTGATGGTAGCACAAGTAACAACAACAATAACTCAATAGGTTTATCAATGATAAAAACATGGCTCAGAAACCAACCACCACCAGAAAACAACAACAATAATAATAATAATGAAAGTGGAGCAGCACGTGTGCAAACACTATCACTATCAATGAGTACTGGCTCACAATCAAGTTCATCAGTTCCTCTTCTCACTTCAAATGTGATGAGTGGTGAGATTTCCTCATCGGAAAATAAACAACTACCTACAACTCCTGTAGTACTTGATAACAACCAATCTGGTGCTATTGTTGAAACTGCTGTGCCTAGAAAATCCATTGATACATTTGGTCAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAGGCTCATCTTTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACTACAACAAATTTTCCCATAAGCCATTATGAAAAAGAATTGGAAGAAATGAAGAACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAAGCATATGATGTAGCAGCAATAAAATTCAGAGGATTAAGTGCAGTTACAAATTTTGACATGAGCAGATATGATGTCAAAACCATACTTGATAGCAGCACATTACCAATTGGTGGTGCTGCAAAGCGATTAAAAGACATGGAAACAGTTGAATCATTGAATAATGTGAATCATGTCAATGTTGATAATATTGGTCATAGAACAACAGAACAAGATCATCATCATCATCATCATCATGGCATCATCATCAACAACAACACTTCTCATAATTTATCTGATCATCATCAAACCATCAACAATTATGCAGCTACAAATGCAGCAGCAGCTAATTGGCATGCTCTTTCATTCCAACAAAATCCTTACAATACCAACATGCAATTACAGAATTACCCTTTTGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATCATAATGGTTATACTACTACTACTGATATTCATCAACATCAACAGCTACAGTTAGGGAATAATGCTATTGCTAACAACACTCATAATTTCTTTGGTTTGCAAAATATTATGAGTATGGATTCTGCTTCAATGGATAATAGTTCTGGTTCAAATTCTGTTGTTTATGGCGGCGGAGAAGGTGGTTATGGAGGTGGATATATGATTCCAATGGCTATTGGAAATGATGGTAATAACCAAAATCAAAGAAGCAATAATAACAGTTATGGTGAGAGTGAGATAAAAGGTTTTGGTTATGAAAATGTGTTTGGAACTAATGATCCTTATCATGCAAGGAATTTGTACTATCAGCAACAACAATTATCTGTTGATCAAGGATCAAACTGCAATAACAATAATAATTGGGTTCCAACTGCAATTCCAACACTTGCACCAAGGACTAGTAATGTGTCTCTTTGTCCACCTTTCACTTTGTTGAATGAATAG 2139 0.382 MASMNLLGFSLSPQEQHPSSQDQTVASRFGFNPNDGSDVQQGFDLSSHHSTSHHHSLNNLSHPFSIYEAYHTNNNIQTTQDWKENYNQNLLLGASCINQNVNQQVQPKLENFLGGNSFTDHHEYGGNNSYSSLHLSATHPEGATNCGVGGGDGSTSNNNNNSIGLSMIKTWLRNQPPPENNNNNNNNESGAARVQTLSLSMSTGSQSSSSVPLLTSNVMSGEISSSENKQLPTTPVVLDNNQSGAIVETAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKNMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILDSSTLPIGGAAKRLKDMETVESLNNVNHVNVDNIGHRTTEQDHHHHHHHGIIINNNTSHNLSDHHQTINNYAATNAAAANWHALSFQQNPYNTNMQLQNYPFGTQTQKLWCKQEQDSDDHHNGYTTTTDIHQHQQLQLGNNAIANNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGEGGYGGGYMIPMAIGNDGNNQNQRSNNNSYGESEIKGFGYENVFGTNDPYHARNLYYQQQQLSVDQGSNCNNNNNWVPTAIPTLAPRTSNVSLCPPFTLLNE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02335 712 Pfam AP2 domain 364 414 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 Pfam AP2 domain 265 320 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 CDD AP2 264 330 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 MobiDBLite consensus disorder prediction 149 163 - -
Trre13g02335 712 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 Gene3D AP2/ERF domain 265 330 IPR036955 GO:0003700|GO:0006355
Trre13g02335 712 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Trre13g02335 712 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 507 - -
Trre13g02335 712 MobiDBLite consensus disorder prediction 1 56 - -
Trre13g02335 712 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 SMART rav1_2 265 334 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 MobiDBLite consensus disorder prediction 144 163 - -
Trre13g02335 712 CDD AP2 363 424 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 ProSiteProfiles AP2/ERF domain profile. 265 328 IPR001471 GO:0003700|GO:0006355
Trre13g02335 712 SUPERFAMILY DNA-binding domain 264 330 IPR016177 GO:0003677
Trre13g02335 712 FunFam AP2-like ethylene-responsive transcription factor ANT 264 330 - -
Trre13g02335 712 SUPERFAMILY DNA-binding domain 363 424 IPR016177 GO:0003677
Trre13g02335 712 FunFam AP2-like ethylene-responsive transcription factor 363 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02335 Trre-Chr13 21139460 21144160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02335 107 454 AP2-EREBP Transcription Factor Family AT1G51190 61.080 7.36e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre13g02335 AP2 3.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02335 K09285 - gmx:100797584 709.138