Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02326 ATGTCCTCCTCCAACACTATCTTCTTCCTCCACCGCAACTTCTCCATCGCCACAAAAACCAATCTCCCAAACCTCTTCAAGATCCCTTCCAAACACAGAAACCTTGTTATCCACGAAGCTCAAAAAGCCCTCATCGATTACCTCCACGGCACAAGGTGTTTACCTTTTACCTACGCAGAACACATTGCCAACAACTCTCTTTGTTCTCTCACCAATCTCATTTCAAAGGTAGATTTTTCCTTACCCACTTTCTCTAATAACATTAAGAGGGTTTTTAGGTATAACCCCATTAATGAATTTGAAGTCTTTTTTGAAAGTATAGGAATAGAGTACAACCTTGTTTCTGGTTTGTTGCCTCATGATAAGTTGTTTTTTTCTCAAGATAGGACCCTTTTAGAAGCTGCTTGTACACTTTCTGATTTTGGGTTTCCATGGGAAAAATTGGGTGTGTTGTACATGGAGAAAAGTTCTATATTTGGGAAAAGTGCTGAAGAGTTGAATTTAAGGCTTTGTAGGTTGAAAAGGTTTGGTTTTGGTAATGTTGAAGTTATTGGGATATGTTTGGCTTTTCCTTTTGTTTTGAGTGAGGAAGTAGGTCAAAAGGGTGTTGTTGGAATTGATGGGTTGTTTAATGATCTAAAGTTGATTTTTTTGGATTTTTCTTTGGGAAGTTATGTTGCGGGAAATGTAGATTCTTGGCATGAGGTGTGTAGAAAGTTGCGGTTGTTTTACGATTTAATTGGATGGAAGGGCAATGTAGGAGAACTCATGGGGAGGAATAAGAGTGTATTTGTTGAACACAAAGAAGATGAGTTACTACATAAATTAGAGTATTTAGTAGAGTATTTTTGTAGATTTGGCGTTGAGAAGGAGGAAGTTGCTCGGTTGATTTTACTATGTCCTGAGTTGTTGAAGCTTGATTTGGAGAAGCAGGTGATTAATGTGTTGGAATTGTTGAAACACTGTGGCATGAGCTCTAAAGATTTGGAGGATATCGGTAAAAAATTTGATCATGTGTTGGGAACAAATAAAATGGTTAATCTGCCTAATGTGATGAGGGCTATGGGTTTGCAGGAGTGGTTCTTTGATAGAATCAAAGGCGAACATTATCGGTTGATAGTGGATTATATCACAAGTTATCCTAATGAAGATCGGGATAAAGATTATCAAGATGGTTTGAAGAGAATTCATGTCTCACGAGCTCGAGTTCATAGTATTAATAAATTAAATTTCTTGCATGGCTTAGGCTTTGGAGAAAATGTCTTGACTATGAACCTTTTGGATCGTTTGCACGGCACAAGCAGTGAGCTACAAGAAAGATTTGATTGCCTTCTGCGCTTGAGGATTGAATTCTCAAAGCTTTGCATGATGGTAAGAAAAACCCCAAGGATTTTAAACCAAAACTATGAAATTATTGAGAGAAAGGTGAATTTCTTCAACCAGGAAATGGGAACAACTTTGGACTATGTGGAAACTTTTCCAGCAATGTTGCATTATCACTTGGACGATCGAGTTATACCTAGATTTGAATTGTTTGGCTCTGGAAGGATCAAGAATGATGATAAACTGATTCAAGAAGGTGTGGGGTCTCTTTCAGAAGCATGGCTTCGTCAAGCTTGCAGAGATCGGGGATTGCTTGGATTGCATTCAGTGGAGGAAATGCGACAGCAGGTATCTTACGACTGTCTTACGGATTTCCCTTGTGGAAAGGCATAG 1716 0.3858 MSSSNTIFFLHRNFSIATKTNLPNLFKIPSKHRNLVIHEAQKALIDYLHGTRCLPFTYAEHIANNSLCSLTNLISKVDFSLPTFSNNIKRVFRYNPINEFEVFFESIGIEYNLVSGLLPHDKLFFSQDRTLLEAACTLSDFGFPWEKLGVLYMEKSSIFGKSAEELNLRLCRLKRFGFGNVEVIGICLAFPFVLSEEVGQKGVVGIDGLFNDLKLIFLDFSLGSYVAGNVDSWHEVCRKLRLFYDLIGWKGNVGELMGRNKSVFVEHKEDELLHKLEYLVEYFCRFGVEKEEVARLILLCPELLKLDLEKQVINVLELLKHCGMSSKDLEDIGKKFDHVLGTNKMVNLPNVMRAMGLQEWFFDRIKGEHYRLIVDYITSYPNEDRDKDYQDGLKRIHVSRARVHSINKLNFLHGLGFGENVLTMNLLDRLHGTSSELQERFDCLLRLRIEFSKLCMMVRKTPRILNQNYEIIERKVNFFNQEMGTTLDYVETFPAMLHYHLDDRVIPRFELFGSGRIKNDDKLIQEGVGSLSEAWLRQACRDRGLLGLHSVEEMRQQVSYDCLTDFPCGKA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02326 571 SMART mt_12 455 486 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 SMART mt_12 487 518 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 SMART mt_12 149 179 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 Pfam mTERF 269 347 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 Pfam mTERF 435 514 IPR003690 GO:0003690|GO:0006355
Trre13g02326 571 Gene3D Transcription termination factor 3, mitochondrial 274 533 IPR038538 -
Trre13g02326 571 Pfam LETM1-like, RBD 504 558 IPR033122 GO:0043022
Trre13g02326 571 PANTHER CGI-12 PROTEIN-RELATED 38 511 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02326 Trre-Chr13 21026876 21029748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02326 517 558 EF-hand Containing Proteins AT3G59820 74.419 2.06e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre13g02326 LETM1 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02326 - - lja:Lj1g3v2862750.1 671.003