Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02309 ATGGAGGAATCATTGGAGAATTTGATTTCCTATATGGAAATGGAAGATGAAGACTTGAATCAAAGTAGTAACTCATTTGATGAGCAAGAGTTTCTCAAAGATATAATCCTTGAGCAACCACAATGTGAAACCTCATCTTATCTTTGTTCAAATAAAATCCAAAACATTGGTACAACTTCTGCAGGTATTGCCACTAGCCCCACAAATAGTATTTTGTCTTTTGATGAGACAAGTTTAATGTGTGATCAAGAAAATGAAACATTAATCCACAAAAGTAATAGCTCCAATTCAATCATGTCTTTGGAAAGATCATCATGTGTTGGTTCTCCTCCAACTTCATACCTTTTATCTTTTGATAACTCAATTGTTGAACCGATGTCACATAAAAGAAGGACTATAGTGAAAGATAAAGTAACAAAAAAGGTTAGAAGGTCATGTGAGACAATACAAGATAACTTAATGGCTGAAAGGAAAAGGAGAAGGGAATTAACTGAGAATATCATAGCACTTTCAGCCATGATACCCGGCTTGAAAAAGATGGACAAGTGTTATGTACTTGGTGAAGCTGTGAGTTACACGAAACAGCTACAGAATCGCATTAAAGAATTGGAGAATCAAAACATAGTAAATTCAGAAATATTCAAATGGAAATCAAAAGCTTCATCAAATAAAAAGAAGTACTCAGAATCATTGCTCGAGATTGAAGCTAGAGTTGTAGAAAAGAAAGTGCTCATTAGAATTCACTGTGAGAAGCAAAAGGACATAGTGCTCAAAATTCATGAATTGCTTGAAAAGTTCAATCTCACTATAACTTCTAGTAGCATCTTACCATTCGGTGCTTCTATTCTTGTAATCAACATTTTTGCTCAGATGGATGAAGAACACAACATAACCATGGATGTCCTTGTGAAAAATCTGAAAAATCATCTGTTGAAGTCTGGAGATATGTGA 951 0.3428 MEESLENLISYMEMEDEDLNQSSNSFDEQEFLKDIILEQPQCETSSYLCSNKIQNIGTTSAGIATSPTNSILSFDETSLMCDQENETLIHKSNSSNSIMSLERSSCVGSPPTSYLLSFDNSIVEPMSHKRRTIVKDKVTKKVRRSCETIQDNLMAERKRRRELTENIIALSAMIPGLKKMDKCYVLGEAVSYTKQLQNRIKELENQNIVNSEIFKWKSKASSNKKKYSESLLEIEARVVEKKVLIRIHCEKQKDIVLKIHELLEKFNLTITSSSILPFGASILVINIFAQMDEEHNITMDVLVKNLKNHLLKSGDM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02309 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Trre13g02309 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 207 IPR036638 GO:0046983
Trre13g02309 316 Coils Coil 186 206 - -
Trre13g02309 316 Gene3D - 155 235 IPR036638 GO:0046983
Trre13g02309 316 PANTHER BHLH TRANSCRIPTION FACTOR 7 312 - -
Trre13g02309 316 Coils Coil 146 166 - -
Trre13g02309 316 Pfam Helix-loop-helix DNA-binding domain 154 197 IPR011598 GO:0046983
Trre13g02309 316 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02309 Trre-Chr13 20735628 20740245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02309 108 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.745 4.29e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g02309 HLH 3.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02309 - - tpra:123888201 488.034