Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02308 ATGACAGCATTGATGAACAATCCTGGAGTCATGAACAAGGTTCAAATGGAAATCAGAAACTTATGTGAAGACAAAGATTTTATAAATGAAAATGAAATTGAAAAGCTTCCTTATCTTAAATCAGTGGTCAAAGAGACACTGAGATTATTCCCTCCAACACCATTACTAATTCCAAGAGAAACTATACAAAATTGTAACATTGATGGCTATGAGATTAAAGCAAAAACTCTAGTGTATGTTAATGCATGGGCCATAGAAAGAGATCCTGAGAATTGGGAAGATCCTGAACAGTTTTATCCTGAAAGATTTTTTATGAGTTCGGGTGATTTTAAAGGGAATAATTTTGAGTTTATATCATTTGGAAGTGGTAGAAGGATGTGTCCAGGATTGAACATGGGAGTGCGCACTGTTGAACTTACAATTGCGATTCTTGTTCGATCTTTTGAATGGAAATTGCCTAATGGTTTTGATAAGGATCAAGTGTTGGATACACAAGTGAAACCAGGAATCGTTATGCATAAGAAAAATGATCTTTATCTTGTTCCTAGAAAAAGAATACCATAG 564 0.344 MTALMNNPGVMNKVQMEIRNLCEDKDFINENEIEKLPYLKSVVKETLRLFPPTPLLIPRETIQNCNIDGYEIKAKTLVYVNAWAIERDPENWEDPEQFYPERFFMSSGDFKGNNFEFISFGSGRRMCPGLNMGVRTVELTIAILVRSFEWKLPNGFDKDQVLDTQVKPGIVMHKKNDLYLVPRKRIP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02308 187 Pfam Cytochrome P450 2 179 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 Coils Coil 11 31 - -
Trre13g02308 187 SUPERFAMILY Cytochrome P450 2 185 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PANTHER CYTOCHROME P450 71B11-RELATED 1 183 - -
Trre13g02308 187 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Trre13g02308 187 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g02308 187 Gene3D Cytochrome P450 1 186 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02308 Trre-Chr13 20733712 20734275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02308 1 186 Cytochrome P450 AT3G26330 53.226 5.35e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02308 - - aip:107646223 274.248