Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02302 ATGGTTTTGAGTAGTAGAATTTTCAATACTCATGTTATTGTTAGTTTCTTTCTGCTGATTATTAGTTGTAGCATGACCTATGGTACTGATAGTGACATCGCCTGCTTAAAAAGCGTACACGAATCGCTAAAAGACCCAAACAATTATCTTGAAAATTGGAATTTCGACAACAAAACTGAAGGGTTTATTTGCAAGTTCAGTGGTGTTGAATGTTGGCACCCTGATGAGAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTCAAGGGCGAGTTTCCTCGAGGCATTCGAAATTGCACAAGCTTAACTGGATTAGATTTTTCATTAAACAGCCTCTCTAAATCCATTCCAGATGATATTTCTAAGCTTGTCGCCTTTGTGACCACTCTTGATCTATCTTCAAATGATTTCACTGGAGTGATACCTTTGTCGCTTTCTAATTGTACCTATCTTAATAGTCTTAAACTTGACTATAACCAACTTACCGGTCAAATTCCTCCGCAATTTGCTCAACTCACGCGGCTTAAGATGTTTAGTGTTTCAAATAATCTTTTGACAGGACAAGTTCCAAATTTTGGAAATGCTGTATCAATTACAGAAGATAGTTATGCGAATAACTCAGCACTGTGCGGCGGTCCCTTGAAGTCTTGCACGAAATCTTCGAAGACTAACACTGCGGTTATAGCTGGTGCAGCTGTTGGTGGTGTGACTCTTGCAGCGTTAGGAGTTTCCGTTGGATTGTTCTTCTATGTGCGCCGTGTTTCATACAGGAAAAAGGAAGAAGACCCTGAAGGAAACAAGTGGGCAAGAATCCTAAAGGGAACCAAGAAAATAAAGGTTTCAATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGCAAAAGCAATGTTATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTGATGATGGCACGTCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCGGAGCAAGAATTTGCGGCTGAGATGGCTACACTAGGAACAGTAAGACATCGGAACTTGGTCCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAGAGACTTTTGGTCTATAAAAATATGCCGAATGGTACTCTTCATGATCAATTACATCCTGATGCCGGCGAGTGTACTATGGAGTGGTCTCTAAGGCTCAAAATCGCAATCGGAGCTGCCAAAGGATTTGCATGGCTTCATCACAACTGCAATCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGACACAGATTTTGAGCCTAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAACCCGATAGATACACATTTGAGTACTTTTGTAAATGGTGAGTTTGGTGATTTAGGTTATGTTGCTCCCGAGTATACAACAACTTTGGTGGCTACTCCTAAGGGAGATGTCTACAGCTTCGGAACTGTGCTTCTTGAGTTGGTGACAGGCGAAAGACCTACTCATGTGGCGAAAGCTCCAGAAACCTTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCTAGCCTAAAAAACGCACTCGATGAATCGTTAGTTGGGAAAGGTGTTGATCACGAGCTATTTCAGTTTCTAAAGGTTGCGTGCAATTGTGTTACATCGTCACCAAAGGAGAGGCCAACTATGTTTGAAGTATATCAGTTTCTAAGAGAAATTGGGAGTAGATATAATTTCATAACCGAGGATGAGATAATGGTACTTACAGATAATGGCGATGCTGGTAAGTTGGAAGAACTTATTGTAGCGCGATAG 1836 0.4058 MVLSSRIFNTHVIVSFFLLIISCSMTYGTDSDIACLKSVHESLKDPNNYLENWNFDNKTEGFICKFSGVECWHPDENRVLNLKLSNMGLKGEFPRGIRNCTSLTGLDFSLNSLSKSIPDDISKLVAFVTTLDLSSNDFTGVIPLSLSNCTYLNSLKLDYNQLTGQIPPQFAQLTRLKMFSVSNNLLTGQVPNFGNAVSITEDSYANNSALCGGPLKSCTKSSKTNTAVIAGAAVGGVTLAALGVSVGLFFYVRRVSYRKKEEDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYKAVLDDGTSLMVKRLQESQHSEQEFAAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDQLHPDAGECTMEWSLRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDTDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSVNSSLKNALDESLVGKGVDHELFQFLKVACNCVTSSPKERPTMFEVYQFLREIGSRYNFITEDEIMVLTDNGDAGKLEELIVAR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02302 611 Pfam Leucine rich repeat 129 186 IPR001611 GO:0005515
Trre13g02302 611 CDD STKc_IRAK 309 580 - -
Trre13g02302 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 378 590 - -
Trre13g02302 611 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Trre13g02302 611 Gene3D Transferase(Phosphotransferase) domain 1 378 597 - -
Trre13g02302 611 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre13g02302 611 SUPERFAMILY L domain-like 30 206 - -
Trre13g02302 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 377 - -
Trre13g02302 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 49 193 - -
Trre13g02302 611 Gene3D Phosphorylase Kinase; domain 1 264 376 - -
Trre13g02302 611 Gene3D Ribonuclease Inhibitor 93 227 IPR032675 -
Trre13g02302 611 Gene3D Ribonuclease Inhibitor 29 92 IPR032675 -
Trre13g02302 611 Pfam Protein tyrosine and serine/threonine kinase 306 577 IPR001245 GO:0004672|GO:0006468
Trre13g02302 611 ProSiteProfiles Protein kinase domain profile. 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02302 611 FunFam Nuclear pore complex protein NUP107 29 192 - -
Trre13g02302 611 SUPERFAMILY Protein kinase-like (PK-like) 280 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02302 Trre-Chr13 20631805 20633780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02302 14 591 Receptor kinase-like Gene Family AT3G28450 45.641 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre13g02302 PK_Tyr_Ser-Thr 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02302 - - gmx:100817267 956.436