Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02298 ATGCAAACCTTGTTCTTATCCTTTTTGTTTATCTTCTTCTCCTCCTCACTAGCATCTCAACATTTTCTCTTTCACAACAACAATAGAAGAATCCTTCATGAACCCTTTGTTCCATTAAACTCTCTCCCTCCAAAATCACCACCACTTCATTCTCCACCTTCAAAACCCAAACACCCATTTTCCACCACCATTCCCACTAATGACAATAACCCAAATCCAGACCAAAACCCAAACCAAAACCCAAACCCAAACCCAAACCAAGGCCAAAATCAAGACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAATCAATCACCATTTTTCCCAAACTACCCTCTATCACCACCACCACCATCCCCACTCACTTTTGCTACATTTCCAGCAAACATCTCTGCCCTAATACTTCCTCACACCCCCCAACCAGCTTCCTCTTCTAACAAACTCCTCCCTATAGCACTCTCTGCTACAGCCATTGCTGCTGCTGTTGTTACTATCTCCGTTTTTCTTTACTTCCGTCGACGTTTCCATAACCGTCGTACTTCTATCGACGCCAAAACTCTAAGATCTGACAGCAGCCTCGAGCTTTTCCCGCGTAATGTAGAAACAACCGGTGATGTTGCCGGAAACGCCTCCGATTTTCTCTACCTCGGAACTGTCGTCAACTCCCGCCGAATTGATGATGCTCCTCGCGGCGGAAGTTCGGTGTCTCGGAAACTTGAATCGCCGGAGCTTCGTCCTCTTCCGCCATTAGTTCGGCTTCCCGCACCTCCACCACCGCGTGACGAGAGCGACTCTGACGAAGAAGATGAAGAATTTTACTCGCCGAGAGGATCTTCTCTTGGTGGCCGAGAAAGCTCCGGTGGAACTTGTTCATCTTCCCGGCGTACATTCTCCGCCATTGCCGCCGTAAGAAGCGTTGAATCAAGCTCAATTTCATGCTCTTCTGCTTCTTTTGGTTCGCCGGAGCATTCTCTTTCGGTTAGTGTCTCACTGCCGGCGAGTTCCAGTCCCCGGAGTACACAACAAAAATCACCTGAAACCACAAAGTCACGCAACACCGTAACCACTACCTCATCACCGATTCAGAATGAACACGTGGAATACAGTTCTTCTTCTTCATCGTTCTCTTCATCACGTTCAACACCAGAGAGAGATTTTGATGAACAAAAAGAAAAGGAAAAAGAAAAGGCTTCTATATCAACAAATGCACATTCAAAATCATCATCATTGTCATTACAAGAGAGATTTATGGAGAAAAATGAGAATGCTTCTTTATTAGAACAACCACAAAGGCAATCTAATGCTTCATCTTCAATTTTTTCTCTTCCTTCTTCACCTGAGAAAATGATGCATCATCAAGCTTTTGATCAATCTCCGAGAATGTCGAGTGTTTCGGATGGGTTAAAGCTACACGGTCTGTCGTCATTGCCTCTGTCACCCGCCCTACTTTCATCGCCGGAAACAGAAAGAGGAGGGTTTAGCTGCAATTCAAACAGATGGGGAACATTTTCTTATGCCGTGCCTGCGCCACAGAGGAAACATTGGGAGATTCCGCTTCCTTCAAAGCCAATTGCTTCACAACCACCACCTCCTCCTCCTCTGCCGCGGCCGCGGCAGAGGAGGCATTGGGAAATGTCAGCAACCTCAGCGATTGTTGATCAGCCTCGATCTAGTTTGATGCCACCGGAGTTACTACCTCCTTCAAGGCCTTTTGTGTTGCAAAACCAGACAAATAATGAGTGTTTAAGGGAAATTGAAGAGAGTTCGAAACCTAAATTGAAGCCATTGCATTGGGACAAAGTGAGAACAAACTCTGATCGTGAAACAGTGTGGGATCAGATGAATTCCATGTCGTTTAAATTGAATGAGGAAATGATTGAGACATTGTTTGTAGTGAACACATCAAACCAAAAACCCAAGGATGCTGCTCCATGGTCTGTTCTTCCCCTGCCAAATCAGGATGGAAGAGTACTAGATCCGAAAAAGTCTCAAAATATTGCAATCTTGCTCAAGGCTCTTAATGTCACAATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTAGTGATACACTCGGCGCAGACCTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGATGACTCACCAACTAAGCTTGATATCGCTGAGAAATTCTTGAAGGCAGTGCTTGATATACCTTTCGCATTTAAAAGGGTTGAAGCAATGCTTTACATGGTCAATTTTCAATCTGAAGTAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGCTGCCTGCGAAGAGCTGCGGAATTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACCGGGAACCGCATGAATGTGGGAACAAATCGCGGTGATGCAGAGGCCTTCAAACTCGATACACTTTTAAAATTGGCTGATGTAAAAGGCGCGGATGGGAAAACCACTCTACTTCATTTTGTTGTACAGGAAATTATTAGAACTGAAGGCGCTCGTCTCTCTGGTACTAATCAAATTACAAGCTCTACTTTAACCGAAGATGTTAAGTGTAGGAGACTAGGCCTACAAGTTGTGTCTAATCTGAGTTCAGAACTATCAAATGTAAAGAGAGCTGCTACTATGGATTCCGAAGCCCTCAGCGGCGATGTCTTTAAAATTTCTAAAGGAACTACAGATATAGCTGAAATTGTGCAATTAATCGAAAAGCTGGGATCTGATGAAAGCAGTCAGAAATTCACAGAATCGATGAACAAATTCATTAGAATGGCGGAGGAGGAAATTCTGAAAATTCAAGCTCAAGAAAGTGTTACTTTGACTCTTGTGAAGGAGATTACTGAATATTTTCATGGAAACTTAGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCTTAGTTGTAAGAGATTTTTTAGCCGTTCTTGACAAGGTCTGCAAAGAAGTTGGTATGGTAAACGAGCGGACTGCGGTTAGTTCAGCTCATAAATTTCCTGTTCCGGTTAATCCAATGCTTCCGCAACCTCTTCCCGGATTATATGGAAGGAAAGATTGTAGTAACTCTTCAGATGATGAAAGTCCATCACCTTAG 3114 0.4335 MQTLFLSFLFIFFSSSLASQHFLFHNNNRRILHEPFVPLNSLPPKSPPLHSPPSKPKHPFSTTIPTNDNNPNPDQNPNQNPNPNPNQGQNQDQNQNQNQNQNQNQSPFFPNYPLSPPPPSPLTFATFPANISALILPHTPQPASSSNKLLPIALSATAIAAAVVTISVFLYFRRRFHNRRTSIDAKTLRSDSSLELFPRNVETTGDVAGNASDFLYLGTVVNSRRIDDAPRGGSSVSRKLESPELRPLPPLVRLPAPPPPRDESDSDEEDEEFYSPRGSSLGGRESSGGTCSSSRRTFSAIAAVRSVESSSISCSSASFGSPEHSLSVSVSLPASSSPRSTQQKSPETTKSRNTVTTTSSPIQNEHVEYSSSSSSFSSSRSTPERDFDEQKEKEKEKASISTNAHSKSSSLSLQERFMEKNENASLLEQPQRQSNASSSIFSLPSSPEKMMHHQAFDQSPRMSSVSDGLKLHGLSSLPLSPALLSSPETERGGFSCNSNRWGTFSYAVPAPQRKHWEIPLPSKPIASQPPPPPPLPRPRQRRHWEMSATSAIVDQPRSSLMPPELLPPSRPFVLQNQTNNECLREIEESSKPKLKPLHWDKVRTNSDRETVWDQMNSMSFKLNEEMIETLFVVNTSNQKPKDAAPWSVLPLPNQDGRVLDPKKSQNIAILLKALNVTIEEVCEALLEGSSDTLGADLLESLLKMAPSKEEERKLKEHKDDSPTKLDIAEKFLKAVLDIPFAFKRVEAMLYMVNFQSEVEYLRKSFQTLEAACEELRNCRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSGTNQITSSTLTEDVKCRRLGLQVVSNLSSELSNVKRAATMDSEALSGDVFKISKGTTDIAEIVQLIEKLGSDESSQKFTESMNKFIRMAEEEILKIQAQESVTLTLVKEITEYFHGNLAKEEAHPFRIFLVVRDFLAVLDKVCKEVGMVNERTAVSSAHKFPVPVNPMLPQPLPGLYGRKDCSNSSDDESPSP 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02298 1037 PANTHER FORMIN-RELATED 8 1020 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre13g02298 1037 MobiDBLite consensus disorder prediction 312 467 - -
Trre13g02298 1037 Pfam Formin Homology 2 Domain 589 983 IPR015425 -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 402 445 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 1018 1037 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 523 537 - -
Trre13g02298 1037 SMART it6_source 584 998 IPR015425 -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 227 294 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 43 123 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 43 59 - -
Trre13g02298 1037 Gene3D Formin, FH2 domain 582 993 IPR042201 -
Trre13g02298 1037 ProSiteProfiles Formin homology-2 (FH2) domain profile. 584 1009 IPR015425 -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 280 294 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 60 109 - -
Trre13g02298 1037 SUPERFAMILY Formin homology 2 domain (FH2 domain) 529 995 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 382 401 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 520 543 - -
Trre13g02298 1037 MobiDBLite consensus disorder prediction 312 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02298 Trre-Chr13 20594476 20598287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02298 588 1001 FH2 protein (formin) Gene Family AT2G43800 61.412 3.22e-170 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02298 - - gmx:100801837 983.015