Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02280 ATGTTTTCTCTTTATCGAAAGTTTTCAGAAAACTTTGAGTATATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCACCGTCTCCAACGACCAGACCTTGAAGTTCATGATGAGAGTCAAGATCAAGATGGAAACAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGCGATGTTGTTGGTCGTAGACCCAGGGGAAGACCTCCAGGCTCAAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAGGTTAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTCAGTGGTAGTGGAACTGTTACTAACGTGACCTTGCGACAGCCAGCTGCCGCAGGATCTGTAGTGACACTGCACGGAAGATTTGAGATATTATCTCTGTCTGGATCCTTTCTACCACCTCCAGCTCCACCGGGTGCTACAAGTTTGAGTGTGTTTCTAGGTGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGATTGCTTCTGGGCCGGTTATTGTTATCGCTTCATCTTTCACTAACGTAGCCTATGAGAGGTTACCGTTGGATGAAGATGAATCCCTTCAGATGCAACAAGGGCAATCATCTGCAGGCGGTGGTGGTGGTGGTGATGGTGTTAATAACTCTTTTCCTGACCCATCTTCGGGGCTTCCATTCTTCAATTTACCTCTAAATATGCCTCAATTGCCTGTGGATGGTTGGGCTGGAAACTCCGGTGGAAGACAATCTTATTGA 846 0.4657 MFSLYRKFSENFEYMAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGGDGVNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02280 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 225 - -
Trre13g02280 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 235 IPR014476 GO:0003680
Trre13g02280 281 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Trre13g02280 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Trre13g02280 281 ProSiteProfiles PPC domain profile profile. 94 231 IPR005175 -
Trre13g02280 281 MobiDBLite consensus disorder prediction 38 87 - -
Trre13g02280 281 MobiDBLite consensus disorder prediction 223 251 - -
Trre13g02280 281 CDD DUF296 98 180 IPR005175 -
Trre13g02280 281 MobiDBLite consensus disorder prediction 224 251 - -
Trre13g02280 281 Gene3D - 97 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02280 Trre-Chr13 20301837 20303216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02280 15 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.026 3.81e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02280 - - gmx:100803960 419.853