Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02275 ATGTTATCAGAATTGATGAACTATTTGACAACGTGTTTTCGGCCACGCGTGGCTCGATATACGCGAAGTGGTTCGGATGCTGGTGGTAAACAGGAAGGACTTTTGTGGTACAAAGACTTAGGGAAGCATTTGAATGGTGAGTTTTCAATGGCTGTGGTCCAAGCCAACAACTTATTGGAGGACCAGAGCTATGTTGAATCGGGTAGTTTGAGTTCTAATGATTCTGGACCGTACGGTACTTTTATTGGTGTTTATGATGGGCATGGAGGGCCTGAGACATCAAGGTTTATCAATGATCACTTAGTTCGCCATCTCAAGAGGTTTGCTGCAGAGCAACAAACAATGTCGGTGGATATAATTCGCAAGGCAATTCAAGCAACAGAAGACGGATTTATGTCTCTTGTTGCCAAACAGTGGTCAACGAAACCACAAATTGCATCTGTTGGATCATGCTGTCTTGTTGGTGTAATTTGTAATGGCACTCTTTATATAGCAAATCTCGGAGATTCCCGGGCCGTGTTAGGAAGAGAAGTCAGAGCAACTGGGGAGGTTTTAGCTGTGCAATTGTCAACAGAGCACAATGCAGCAATAGAGTCTATAAGACATGAGCTGCGAGCTTCACACCCTGACGATTCAAACATTGTTGTTCTGAAGAATAATGTATGGCGTGTGAAGGGCCTAATACAGATATCTAGATCTATTGGCGATGTATACCTGAAAAAAGCCGAGTTCAATAGAGAACCACTATATGCAAAGTTTCGACTTCGGGAGCCATTCAAGAAGCCAATATTGAGTTCAGAACCGTCGATTTCTGTTCACCAGTTGCAGCCACAAGATCAGTTTATTATATTTGCATCTGATGGGCTCTGGGAGCAACTTAGCAATCAAGAAGTGGTTGATATTGTTCAAAATAATCCCCACTCTGGAATTGCGAAGAGGCTTGTGAAATCTGCACTTCATGAAGCTGCAAAGAAGAGAGAAATGAGATATTCAGACTTAAAAGATATTGACCGTGGGATTCGTAGGCATTTTCACGATGATATCACGGTGATTGTTGTGTTTATCGATTCAAATCTCGTGAGTAGGGCAAGCAATGTTAAGTTCAGTAATATTTCCGTTCGAGGGGCCGGTGTCAACCTCCGTCTTAACACACTGGCACCGACATAA 1167 0.4284 MLSELMNYLTTCFRPRVARYTRSGSDAGGKQEGLLWYKDLGKHLNGEFSMAVVQANNLLEDQSYVESGSLSSNDSGPYGTFIGVYDGHGGPETSRFINDHLVRHLKRFAAEQQTMSVDIIRKAIQATEDGFMSLVAKQWSTKPQIASVGSCCLVGVICNGTLYIANLGDSRAVLGREVRATGEVLAVQLSTEHNAAIESIRHELRASHPDDSNIVVLKNNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKKPILSSEPSISVHQLQPQDQFIIFASDGLWEQLSNQEVVDIVQNNPHSGIAKRLVKSALHEAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFIDSNLVSRASNVKFSNISVRGAGVNLRLNTLAPT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02275 388 CDD PP2Cc 48 355 IPR001932 -
Trre13g02275 388 Gene3D - 38 367 IPR036457 -
Trre13g02275 388 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Trre13g02275 388 FunFam Phosphatase 2C family protein 36 365 - -
Trre13g02275 388 SMART PP2C_4 41 353 IPR001932 -
Trre13g02275 388 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Trre13g02275 388 PANTHER PROTEIN PHOSPHATASE 37 353 IPR015655 GO:0004722|GO:0006470
Trre13g02275 388 Pfam Protein phosphatase 2C 73 324 IPR001932 -
Trre13g02275 388 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02275 Trre-Chr13 20259508 20262262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02275 1 388 PP2C-type Phosphatase Gene Family AT4G38520 72.938 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02275 - - jre:109006616 649.047