Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02267 ATGGAGTACGAGTTCGTGCCAGATAATCGCTATGAACCCCTCATAGCTGTTGACTCCACAAAAGGAAATGGCGTTTACCAAGTTAGGGTTCTTAGAAAATGGAAGGTTGTCGATTCTAGCATGCCTAGCACTTTCGGTTCTGTTGATTTGGTTTTGATTGATATACATGGAATTAAGATTCATGCTTCGATTGCAAAGGATATCCTTCATCTTTTTGATGAAAAAATTCTTGAAGGAGGGGTTTATTGTATATCATCTGTTGATGTTAGGTTTAATTTTGGTTCCCTTATTCCCACCTATCACAAATATAAATTTGTCTTTACCGAAGCTACTGTTGTTGCTGAATCAACAAATAGTTTTATTCCTGATACTGATTTTTCTTTGATTCGAGCAAAGGATGTTAGGAAAAATAGAAACTCATTCAAGTATATGGTTGATGTTGTTGGTCTGGTTACTTCTGTTAATCATGACAAGGATTTTTTTCCTGATGGAACTGTCAAAGAATCTGTGACCTTTAGGCTTAATCAAGTGAGAAGATCTTTCTTGTGTGAGTTCTCTGGTAAGTTGGTTGATGAATTTCTCAGTGGTATTGGACCCTCTCCTGATGGATTGCCAATTGTTGTGCTGCAGTTTGTGAAGCTTGGTAGATCCCAAGGTTCTGTTTTAGTTGAGGGAATTGAAGGTGTTACAAGGATGTTTGTTAATCCTATTATTGTTGATGTTTTGAAATTTAGGAAAAGTTTGGTGCAGTATTTGAGTGCACATTTGGATTATAGTGGTCTGTATCGGCCTTTTCTGCGTACCCCTATTTCAATCACTATGGACTTTCTTAAAGATTTTCCATTTAGGACTGTGGGTCAGTTGACCTCTAATGCAGAAGTTGGTTATTTCACTGTTAATGCAAGGATCATCGACATTGTTGATTTTGATCCTTGGTGGTATGCAATGTGTGACTGTCCTCGTGTGTTTAGAGAGTATATTGGAGATTTTAAATGTGTCAAGTGTCAGGCTCCAAAATGGACTCCCTCCCCAAAGGTGAAATTGACTTTTAAGGTTGATGATGACACTGGTTCTGGACTGTTTAAGGCTTTTGATCATGTCATGATTAATGTTGCTGCTGTTAATTCAACTTCACAGGGGATCAGTGCTGATACTTTCTATAATGCTTTCAAGGATGTTCTGGGAAAAAGTATTATGTTTATTGTGAGGAAGAGCATTCATGAACCTATGTTTCTTGGCACCACTTATGATGTAATTCGTGTGGCTGATAGTCAATCCATTCTTAATTACTTCATGGAAAAAGGAAATTGTGTTGTCTCTTCAAAGGTTATAGAGAGGAGGGTGACTGAGTCTAGAAGTGAAGTTCCAGCTGTTAGTGAAGATAATGGGACTAATAAAATTAAAGAACTTATCAAAGAGTATCATTCTGGAATAAATCCTTGCACTACCTCTGGCATTGATGTTGCATCTTCTTCAGGATCCAAACGTTCAAGAGATGATTAG 1503 0.3746 MEYEFVPDNRYEPLIAVDSTKGNGVYQVRVLRKWKVVDSSMPSTFGSVDLVLIDIHGIKIHASIAKDILHLFDEKILEGGVYCISSVDVRFNFGSLIPTYHKYKFVFTEATVVAESTNSFIPDTDFSLIRAKDVRKNRNSFKYMVDVVGLVTSVNHDKDFFPDGTVKESVTFRLNQVRRSFLCEFSGKLVDEFLSGIGPSPDGLPIVVLQFVKLGRSQGSVLVEGIEGVTRMFVNPIIVDVLKFRKSLVQYLSAHLDYSGLYRPFLRTPISITMDFLKDFPFRTVGQLTSNAEVGYFTVNARIIDIVDFDPWWYAMCDCPRVFREYIGDFKCVKCQAPKWTPSPKVKLTFKVDDDTGSGLFKAFDHVMINVAAVNSTSQGISADTFYNAFKDVLGKSIMFIVRKSIHEPMFLGTTYDVIRVADSQSILNYFMEKGNCVVSSKVIERRVTESRSEVPAVSEDNGTNKIKELIKEYHSGINPCTTSGIDVASSSGSKRSRDD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02267 500 Gene3D - 280 430 IPR012340 -
Trre13g02267 500 Pfam Domain of unknown function DUF223 50 128 IPR003871 -
Trre13g02267 500 SUPERFAMILY Nucleic acid-binding proteins 27 116 IPR012340 -
Trre13g02267 500 CDD RPA1_DBD_A_like 27 113 - -
Trre13g02267 500 Gene3D - 121 253 IPR012340 -
Trre13g02267 500 SUPERFAMILY Nucleic acid-binding proteins 293 408 IPR012340 -
Trre13g02267 500 Gene3D - 11 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02267 Trre-Chr13 20173629 20175857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02267 10 365 Core DNA Replication Machinery Family AT5G08020 22.487 4.29e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02267 - - tpra:123914763 439.499