Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02265 ATGGTGTTTAATGAAAGCTCTGTTTCCAATCCGAAGTTTGATTCTATTGCTGATATTCATCCTGGTAAAGAGAATATTCGAATTAATGTTAGGGTTCTTCGCCTGTGGAAGGTGCCCACGTTCCTGAATCCATCTGAGAATGGTTCAATTGAGATGGTTTTGGTTGACGATAAGGGTGGTAAAATTCATGCTACTATAAAGAAGCAGCTGATTTACATGTTTGAGAAGAATATTGAGGAGGGAAAGACATATGATATTTCTTGGTTTGTTGTGTACCCCCAAAGTGGTTCCTATCGCAGTACACTTCATCCATACAAAATTGTGTTCCAGTTGAAAACAAAGGTTAAATTATCAGAGTGTTCGTCTATTACTGCTTATGGTCTCACTATAACCAACATTTCTGATGTGTGTGCTCATACTCATGACTATGAGTTTTTGGTTGATGTTATTGGTTATATGACTGGGTTATCTGCTGAAAGAGAGTATATTCGTGATGGGAAAGTTACCAAGATGGTTGTTGCTGAGTTAACTGATCACAGTGGTAAATGCGAGATTGCTTTGTTTGGAAATTATGCTGAAGATTTGACAAAGCAAGTGGGTAAGCTGTCTGGTGGTTTGCCTATTGTTGTTGTGCAGTTTGCTAAAGTGAAAATATTTAGAGACAAATCTTCGCTTCAAAATGTGATGAATACCACTAGGATTTTTGTCAATCCTGATATTGATGAGGTTGAATCTTTTAAAAACAGTGTTGCTGTGCAAGGTGTTGACCTTGACTCAGATGTGCCATTGCTTGGTCAGCCTGCTAAGCCATCTTTTGAAGAGGAGTTTCTTCGTATGCACCCCAGAAAGAATGTTTGTCAGTTGGATAGTTTGGAGGACGGGGGTGTCGCTGTTGTTTGTGCTGAAATTGTTCGTGTTATTGACGGGAGTGATTGGTGGTATCCAGCTTGCAAGTGCCATAGGAGTGTTTTTGCTGACCTTGGCTCATATTTTTGCAGCTCATGTGATAGGCATGTGTTTCAAGTTGTTCCAAGGTTTCGTGTGAAGGTTGAAGTCTCTGATGGTGGTTCATCAGCTGTATTTGTTATATTTGATACTGAAATGAGCTATGTTATGGAGAATTCATGCGCCTATTTTGTTTCTCGAGCTAAGGTTTGTAGCGGTGGTTCTTATCCAAATGAATTTGATACATTAGTTGGGAAGAAGATGTTGTTTTCTGTTCAGAAATCTCCTACATTGGGTCTTGCTACTTCTTCTTATAGGGTTAAAAGAATTTGTGCGGATCCTGTTGTGATTGACCAGTTCTGTTCTGCCACTTCGTGTCCCACTTCACCTAAGACAATTCAGCCTGTTGTTGATTTGGATTCTGACGGAGTCCCTGGTGAATATGATGGTGTGATTGATTCACAAGCAAGTGACTTCTCCGACTGTCTTATCGTCACCCCTACAAAATGTCTTGAGAATTCAGCTGGAGATGATGACATGGATATCCCTTTAAAGAGGACTTTTGCAAAAACTACTAACTCTGCTTCCAAGCGCCAGGGAAATAAACGTCTCAAACCTGTGAAGATTGAGAAGGATTAA 1584 0.3996 MVFNESSVSNPKFDSIADIHPGKENIRINVRVLRLWKVPTFLNPSENGSIEMVLVDDKGGKIHATIKKQLIYMFEKNIEEGKTYDISWFVVYPQSGSYRSTLHPYKIVFQLKTKVKLSECSSITAYGLTITNISDVCAHTHDYEFLVDVIGYMTGLSAEREYIRDGKVTKMVVAELTDHSGKCEIALFGNYAEDLTKQVGKLSGGLPIVVVQFAKVKIFRDKSSLQNVMNTTRIFVNPDIDEVESFKNSVAVQGVDLDSDVPLLGQPAKPSFEEEFLRMHPRKNVCQLDSLEDGGVAVVCAEIVRVIDGSDWWYPACKCHRSVFADLGSYFCSSCDRHVFQVVPRFRVKVEVSDGGSSAVFVIFDTEMSYVMENSCAYFVSRAKVCSGGSYPNEFDTLVGKKMLFSVQKSPTLGLATSSYRVKRICADPVVIDQFCSATSCPTSPKTIQPVVDLDSDGVPGEYDGVIDSQASDFSDCLIVTPTKCLENSAGDDDMDIPLKRTFAKTTNSASKRQGNKRLKPVKIEKD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02265 527 Pfam Replication factor-A C terminal domain 303 377 IPR013955 -
Trre13g02265 527 Gene3D - 122 257 IPR012340 -
Trre13g02265 527 SUPERFAMILY Nucleic acid-binding proteins 292 408 IPR012340 -
Trre13g02265 527 SUPERFAMILY Nucleic acid-binding proteins 129 257 IPR012340 -
Trre13g02265 527 CDD RPA1_DBD_A_like 27 115 - -
Trre13g02265 527 SUPERFAMILY Nucleic acid-binding proteins 12 118 IPR012340 -
Trre13g02265 527 Gene3D - 12 118 IPR012340 -
Trre13g02265 527 CDD RPA1_DBD_B_like 148 250 - -
Trre13g02265 527 Gene3D - 275 434 IPR012340 -
Trre13g02265 527 MobiDBLite consensus disorder prediction 504 527 - -
Trre13g02265 527 PANTHER OS03G0429900 PROTEIN 15 410 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre13g02265 527 Pfam Domain of unknown function DUF223 51 123 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02265 Trre-Chr13 20166346 20168633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02265 16 354 Core DNA Replication Machinery Family AT2G06510 23.677 2.01e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02265 - - tpra:123904946 615.535