Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02257 ATGGCTTCCTCACAACCTTCTTCACCAACTGATTCCAATCCACCATCCGCCGTTCCTCTTCCTCTTTCCTTACCTGCACCACCACCGCCACCACCAACAACAACCTCTTCCCGCCGTCTTCCTCCTCCTTGCTGGACCCCTGAAGAAACATCTGCCTTAATCGATTCGTATCGTGATAAATGGTATTCTCTTGGCCGTACAAATCTCAAAGCAATTCATTGGCAAGAAGTTGCTGACGCCGTTACCGTTAAGTGCCCTAATGCTTCACCGACACACAAAACCGCCGTTCAGTGCCGTCATAAAATGGAAAAACTACGTAAACGTTACCGATCTGAAATTCAACGGCTTAGATCTCTTCCTGTTCCTAGATCTCGTTCTTCTTCTTCTTGGGTTCATTTTAAATCTATGGATTCTATGGAAAAAGGTCCTTCTCCTCCTTCTCCACCACCGATGATCAAAATTGAAAACCCTAATCATCTTAATCACCGTGAAACCCTAGATGACAACAATGATCTTGACGACGATGATCTATATGAGGAACTCAGAAGTGCTGCTAGTGGTGGATCTGGAAACGCGAGGAGTATCGATAAACTCTACCAGAATGGAGTTTCCGGTGGTGGTGGTGGTGGTCCTCTAGGTGGTGGTTTTCGGATCAGGATTCCTACCGGTGTGAGCGTGGCGCAACCTGGATTGAAATTCTATGGTGGTTATAATCAGAAAATGAATAATAACAATTCAGAATCTGGTTCTCGGATCAATGGTGGAATGATGCTTATTAAGGAGAGAGTTGGGTTAGGGAAGAGAGAGAGGGAGAGGGAGAGAGAGGTAGAGAGAGAAAGAGATCCAATTGGTGAAATGGTGAATGCTATTAAGGTTTTGAGAGATGGGTTTGTTAGAATGGAGCAAATGAAAATGGAGATGGCTAGAGAGATTGAAACTATGCGTATGGATATGGAGATGAAGCGTACTGAAATGATACTCGAGTCTCAGCAGAGGATCGTTGAAGCTTTTGCGAAAGCGGTTTCGGAGAAGAACAAGAAGAGGAAACTACATAAGGGTAATAGTAACAACAACAACAACAACAACAACAATAGCAACACCAATAACAACAACATAGCTTCACCCTCAGAATCGTAG 1137 0.4415 MASSQPSSPTDSNPPSAVPLPLSLPAPPPPPPTTTSSRRLPPPCWTPEETSALIDSYRDKWYSLGRTNLKAIHWQEVADAVTVKCPNASPTHKTAVQCRHKMEKLRKRYRSEIQRLRSLPVPRSRSSSSWVHFKSMDSMEKGPSPPSPPPMIKIENPNHLNHRETLDDNNDLDDDDLYEELRSAASGGSGNARSIDKLYQNGVSGGGGGGPLGGGFRIRIPTGVSVAQPGLKFYGGYNQKMNNNNSESGSRINGGMMLIKERVGLGKREREREREVERERDPIGEMVNAIKVLRDGFVRMEQMKMEMAREIETMRMDMEMKRTEMILESQQRIVEAFAKAVSEKNKKRKLHKGNSNNNNNNNNNSNTNNNNIASPSES 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02257 378 Coils Coil 99 119 - -
Trre13g02257 378 MobiDBLite consensus disorder prediction 135 174 - -
Trre13g02257 378 Pfam Myb/SANT-like DNA-binding domain 43 139 IPR044822 -
Trre13g02257 378 MobiDBLite consensus disorder prediction 354 378 - -
Trre13g02257 378 FunFam Trihelix transcription factor ASIL2 45 111 - -
Trre13g02257 378 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 344 IPR044823 -
Trre13g02257 378 MobiDBLite consensus disorder prediction 1 45 - -
Trre13g02257 378 Gene3D - 45 111 - -
Trre13g02257 378 MobiDBLite consensus disorder prediction 342 378 - -
Trre13g02257 378 MobiDBLite consensus disorder prediction 12 38 - -
Trre13g02257 378 SMART 118neu2 52 144 IPR006578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02257 Trre-Chr13 20114041 20115177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02257 44 139 Trihelix Transcription Factor Family AT3G14180 31.250 1.03e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g02257 Myb_DNA-bind_4 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02257 - - mtr:11426900 432.565