Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02255 ATGCCTCCGAAAGTGGTAAAAAGAGGTGCTGCGGCCAAGAAAGCGAAAGATTCTTCAAAAACTGCAATTCAGAAGCAGCAGCAAGAATCTGAACCTGAACCTGTTGCTGATGTTGTAGGGGAAGATAATCCCGTTGAAACAAACAATTTGGCTCAAGAGATTGTGCCTAATGGTTTGAATGTGGTGGAATCCAATGGAGAGGAGATTAAGGAGTCCTTAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTATGATCCTGAGGAGTATGTTGGTGATGACTATGATGAGCGGGAAATTGAACAAGATGAGGGTCAGGAGATCGGAGATGAAGTGGAGGAAGAACCTGAAGAAAATGTGGATGAAGAAGGTAATACAGGCGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAAGGTGATGATGATGCCGCTGCTGGTGATGATGATGCTACTGCAGGTGATGATGATGCTACTTCTGGTGATGATGATGAGCATGCTGCTGAGGAGAACGGGCATGAGCATCTGGTTGATGTGGAGGAAGAGGAACAAGGTGAAGTTAGAAAGGCGAGGCAGAAGAAAAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAAGATGCGACGGACCATGATCTGAGGAAGGTTTTCGGTAAAGTTGGGGAGATTACTGAAGCCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTATTGCGTTTTGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAAAGACCAGTGATTAATGGCAAACAATGTGGTATCACTACATGTCCGGACAGTGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGATGCTTTAAAGGAGAAATTGAAACGTTATGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAATGAGGGTACAAACTGTGGATTTGCATTTTTGGAATTTTCATCTCGTTCAGATGCTAAAGAAGCCTATAAGCGATTGCAGAAGACAGATATTGCTTTTGGAGATGATAAGCCTTCAGAGATTTCCTTTGTAGACTCCTTTATTGACCTGGGTGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTCCTTCATGGGATGAAGGTTATGTCCAAGATCTTCTTAAGAAATACGGGGAAGTTGAAAAAGTTGAGCTTGCTAAGAACATGCCAGCGGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCTACGCATGCTGCTGCTGTGGAATGTTCTGAGAGCATCACCAGTGCAGGGTTAGGGGAAGGCAGCAAAAAGGCAAAAGTTAGGGCTAGATTGTCGAGACCTCTTCCGAAAATTCGTGGAAAACATGTTACTCGCAAGGACTTTTCTGGCCGAAAGTCTGGAAGATTGGCAAGGCCTTCACGTAGTGGACCTTTACCACGGAGTCGACCTTTACCACGGAGTCGACCTATACCACAGAGTCGACCTGCTCGTGTGGTGAGAAGATTTGGAAATCGTATTCCACCAGTTAGACCTTCTAGTGCGAGAAATAGACGTCCTGTCACATCGATGCCAGTAAGAGCTAGGCCAGTCACTCCTCCAGCTAGATCGTATGACAGGAGATCGACCGCTGCATATCCAAAGAGTAGCATCAAGAGAGCTTATGACCGACCTGTGGATCTTCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGTTCTCAGATGGCCCCTCAAAGACGTCCATCTTCTTACAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGACCTGCATAGGAATGCATCTCGTACTGCACCAAGGAGGGGTTATCTGGATGATGGTTATGATCGAAGACTTGAGAGGCCTCCTCCTCCACCTCCCCATTTAAGTTACCATGAAGGACGTCCCCGTGATTACGACACACTATCTGGCTCGAAACGTCCTTATGCTTCCATTGATGATATTTCTCCACGGTATGCTGATGCTGCTGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGTAGTGGTTCACACTATAGAGAGGCTTATGATGATAGGCTTGGAAGATCTAGTTTGGGATATCATAGTGGCAGTAGAAGCTCTATATCCATTCAAAACTCACATGGAACATATATCAGTCGACATGACACGAGTAATGGCGGAGGTTCTATTGGTGGTAGTGATGGGGGTATCTACTCATCAAGCTATGGTTGCGATTACATATCTCGTGAAAGTGATGTTGGCCGGAGCTCGTATTCGTCCATGTATTCTAGCAGGGGTATGAACGGTAGTAGCAGTTATATGGGTGGTGGTGGTGGTGGATCTAGATCTTATTATTGA 2391 0.4396 MPPKVVKRGAAAKKAKDSSKTAIQKQQQESEPEPVADVVGEDNPVETNNLAQEIVPNGLNVVESNGEEIKESLDEYEKDEHLDLEDNYHEYDPEEYVGDDYDEREIEQDEGQEIGDEVEEEPEENVDEEGNTGDEEVEYVYEEVEGDDDAAAGDDDATAGDDDATSGDDDEHAAEENGHEHLVDVEEEEQGEVRKARQKKKEFEVFVGGLDKDATDHDLRKVFGKVGEITEARLMMNPQTKKNKGFALLRFETVEQVKRALAELKRPVINGKQCGITTCPDSDTLYLDNICKTWKKDALKEKLKRYGVESFKDLTLVEDGNEGTNCGFAFLEFSSRSDAKEAYKRLQKTDIAFGDDKPSEISFVDSFIDLGDDIMAQVKTVFIDLLPPSWDEGYVQDLLKKYGEVEKVELAKNMPAARRKNYGFVTFATHAAAVECSESITSAGLGEGSKKAKVRARLSRPLPKIRGKHVTRKDFSGRKSGRLARPSRSGPLPRSRPLPRSRPIPQSRPARVVRRFGNRIPPVRPSSARNRRPVTSMPVRARPVTPPARSYDRRSTAAYPKSSIKRAYDRPVDLPPPRSRVSADYGSQMAPQRRPSSYRDYPARDSGYSDLHRNASRTAPRRGYLDDGYDRRLERPPPPPPHLSYHEGRPRDYDTLSGSKRPYASIDDISPRYADAAARQSRSRLDYDYGGSGSHYREAYDDRLGRSSLGYHSGSRSSISIQNSHGTYISRHDTSNGGGSIGGSDGGIYSSSYGCDYISRESDVGRSSYSSMYSSRGMNGSSSYMGGGGGGSRSYY 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02255 796 Gene3D - 283 364 IPR012677 -
Trre13g02255 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 366 IPR000504 GO:0003723
Trre13g02255 796 MobiDBLite consensus disorder prediction 45 59 - -
Trre13g02255 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Trre13g02255 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 461 IPR000504 GO:0003723
Trre13g02255 796 CDD RRM_SF 381 436 - -
Trre13g02255 796 MobiDBLite consensus disorder prediction 171 196 - -
Trre13g02255 796 SUPERFAMILY RNA-binding domain, RBD 200 277 IPR035979 GO:0003676
Trre13g02255 796 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 791 - -
Trre13g02255 796 MobiDBLite consensus disorder prediction 605 637 - -
Trre13g02255 796 MobiDBLite consensus disorder prediction 444 667 - -
Trre13g02255 796 MobiDBLite consensus disorder prediction 76 196 - -
Trre13g02255 796 Gene3D - 375 461 IPR012677 -
Trre13g02255 796 MobiDBLite consensus disorder prediction 1 63 - -
Trre13g02255 796 SUPERFAMILY RNA-binding domain, RBD 281 438 IPR035979 GO:0003676
Trre13g02255 796 CDD RRM_SF 205 274 - -
Trre13g02255 796 SMART rrm1_1 380 455 IPR000504 GO:0003723
Trre13g02255 796 SMART rrm1_1 204 277 IPR000504 GO:0003723
Trre13g02255 796 SMART rrm1_1 284 362 IPR000504 GO:0003723
Trre13g02255 796 Coils Coil 59 79 - -
Trre13g02255 796 Gene3D - 157 278 IPR012677 -
Trre13g02255 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 438 IPR000504 GO:0003723
Trre13g02255 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Trre13g02255 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 351 IPR000504 GO:0003723
Trre13g02255 796 CDD RRM_SF 285 351 - -
Trre13g02255 796 MobiDBLite consensus disorder prediction 89 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02255 Trre-Chr13 20099012 20104070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02255 205 467 Eukaryotic Initiation Factors Gene Family AT1G22760 21.812 4.97e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02255 - - gmx:100811387 860.136