Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02246 ATGATTCTCTCAAGCTGGCAAATTATTTTCATAATTCTTTTTATCCTTCCAACACTCTCATGGTCACAAGCTGAAGCAACTGAAGCACAAGCTTTGTTAAAATGGAAAAATAGCTTTGATAACCAAAGTCAAACACTCTTATCAACTTGGAAAAATACCACAAATCCATGCAATAATTGGCAAGGAATTACTTGTGATAAAAAATCCAATTCAATTTCTACCATAAACCTTGAAAATTTAGGACTAAAAGGTAATTTGAGCAAATTAGATACACTTATACTTTCTAATAACACCAAGATTTCAGGACCAATTCCACACTCTTTGTGGAATTTGTCTAGCTTGAGATTGATCTATTTTAACAACATGAGTCTTTCTGGTTCAATTTCTGATTCTATACAAAATTTGGTTAATTTGGATACACTTGCACTTGATATTAATCACTTTTCTGGATCCATTCCTTCCACAATTGGAAAGTTGAAAAAACTATATTCTTTGTATTTGGGAACGAATCGTTTTTCTGGATCGATTCCGGACTCTATAGGAGATTTGATAAATTTAGAAGAATTTAGTGTCCAAGAAAACAATCTCTCAGGAACTATTCCAGCTTCAATTGGAAATTTGAAGTGGCTCAATGTGTTTGAAGTAGCTACTAATAAACTTCATGTTGGTCATTTACCGCCGAAAATATGTTCTGGTGGACAGTTGAGGTACTTGAATGCTGATCACAACCGTTTCTCGGGTCCGGTACCAACAAGTTTGAAACACTGTGATACCGTTGAAAGAATCAGACTTGAGGGAAATTTGATAGAAGGTGATATAGCAAAAGATTTTGGTGTATATCCGAATTTGCGATACCTTGATTTGAGTGACAATAAGTTTCATGGCCAAATTTCATCAAACTGGGGAAAGTCTCTTGATCTTGATACTTTCAAGATATCCAACAATAATGTTTCGGGTGGTATACCGTTGGAGCTTACTGGTTTAACTAAGCTGGGTAGGCTTCATATTTCTTTGAACCAATTGACCGGGAAACTTCCAAAGGAATTAGGAGACGTGAAGTCATTAGTTGAACTCAAGATAAGTGACAATCATTTTACAGATAACATTCCAACAGAAATTGGATTGCTGCCAATACTTAATGAGTTGGATCTCGGAGGAAATGAGTTGAGTGGCACAATACCGAAAGAAGTTGCAAAGCTACCAAGGTTACGGATATTGAATTTGAGCAGAAACAAATTCATAGGAAGTATTCCGGTTCAGTTTGGTTCGGATTTGGAATCACTTGATCTTAGTGGCAATTTTTTGACTGGAACAATACCAATAACTCTTGATAACTTGGTGCAGTTGTCAATGTTGAATCTCTCACACAATAGGCTTTCAGGAACCATTCCTCAAAATTTTGAAAGGAGTTTGGTTTTTGTTAATATATCAGACAACCAGTTAGAAGGGCCACTTCCAAATATTCCAGCTTTTCTTAATGCTTCAATCGAATCATTCAAAAATAACAAAGACTTGTGTGGAAATATCGCAGGTTTAGATCCTTGTGCAACAAACCATAGTAGAAAGAGCAAAAATGTCCTCCGATCGGTATTCATTGCTTTAGGAGCTCTAATATTTGTGTTGTGCATGGTTGGAATTTCGATGTATATTTTGTGTCGAAGACAAAAACCAAAGGAAGAAAGCCAAACTGTAGAAGAAGCACAAAAGGGAGTACTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATCGAAGCTACCGAGAATTTTGATGATAAATATCTCATCGGAGTTGGAAGTCAAGGAAATGTTTACAAGGCCGAGTTGTCTGCAGGTGTGGTTGTTGCTGTGAAGAAGCTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTCAAGAGTGAGATTGAAACCTTGGCTGAAATCAAACACAGGAACATCATTAAACTTATTGGATTTTGCTCACATTCTAAGTTTTCATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACACAAGCCACTGCATTTGATTGGGAAAAGAGAGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCATGATTCCTTACCTCCTATTATTCATCGCGATATATCAAGCAAGAATGTTCTTCTTAATCTCGACTATGAAGCTCATGTCTCTGACTTCGGTATCGCTAAGTTTCTAAAGCCTGGTTTACATAGTTGGACTCAATTTGCAGGCACTTTTGGATATGCAGCACCAGAATTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATATAGCTTTGGTGTCCTTGCTTTGGAAATCATAATAGGAAAACATCCGGGAGATCTCATTTCATTATTTTTGTCACCATCTACAAGGCCAATGGCTAATGATATGTTGTTGATAGATGTTTTAGATCAACGACCGGAACAAGTTATGAAACCAATCGATGAGGAGGTTATCTTGATTACAAAGTTGGCATTTGCTTGCTTGAGTCAAAATCCACGTTCTCGTCCAACCATGGAACAAGTATCTAAGATGCTTGCAGCAGGAAAATCACCTTTGGAGGGGACTCAACTTCGCACGATCAGACTAGGACAACTGCAATAA 2664 0.3667 MILSSWQIIFIILFILPTLSWSQAEATEAQALLKWKNSFDNQSQTLLSTWKNTTNPCNNWQGITCDKKSNSISTINLENLGLKGNLSKLDTLILSNNTKISGPIPHSLWNLSSLRLIYFNNMSLSGSISDSIQNLVNLDTLALDINHFSGSIPSTIGKLKKLYSLYLGTNRFSGSIPDSIGDLINLEEFSVQENNLSGTIPASIGNLKWLNVFEVATNKLHVGHLPPKICSGGQLRYLNADHNRFSGPVPTSLKHCDTVERIRLEGNLIEGDIAKDFGVYPNLRYLDLSDNKFHGQISSNWGKSLDLDTFKISNNNVSGGIPLELTGLTKLGRLHISLNQLTGKLPKELGDVKSLVELKISDNHFTDNIPTEIGLLPILNELDLGGNELSGTIPKEVAKLPRLRILNLSRNKFIGSIPVQFGSDLESLDLSGNFLTGTIPITLDNLVQLSMLNLSHNRLSGTIPQNFERSLVFVNISDNQLEGPLPNIPAFLNASIESFKNNKDLCGNIAGLDPCATNHSRKSKNVLRSVFIALGALIFVLCMVGISMYILCRRQKPKEESQTVEEAQKGVLFSIWSHDGKMMFENIIEATENFDDKYLIGVGSQGNVYKAELSAGVVVAVKKLHLVTDEEMSTFSSKSFKSEIETLAEIKHRNIIKLIGFCSHSKFSFLVYNFLEGGSLDHILNNDTQATAFDWEKRVNVVKGVANALSYLHHDSLPPIIHRDISSKNVLLNLDYEAHVSDFGIAKFLKPGLHSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIIGKHPGDLISLFLSPSTRPMANDMLLIDVLDQRPEQVMKPIDEEVILITKLAFACLSQNPRSRPTMEQVSKMLAAGKSPLEGTQLRTIRLGQLQ 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02246 887 FunFam Nuclear pore complex protein NUP107 25 178 - -
Trre13g02246 887 SUPERFAMILY Protein kinase-like (PK-like) 579 866 IPR011009 -
Trre13g02246 887 ProSiteProfiles Protein kinase domain profile. 594 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02246 887 PRINTS Leucine-rich repeat signature 446 459 - -
Trre13g02246 887 PRINTS Leucine-rich repeat signature 425 438 - -
Trre13g02246 887 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Trre13g02246 887 Gene3D Transferase(Phosphotransferase) domain 1 675 877 - -
Trre13g02246 887 Gene3D Ribonuclease Inhibitor 260 524 IPR032675 -
Trre13g02246 887 SUPERFAMILY L domain-like 49 294 - -
Trre13g02246 887 SMART LRR_typ_2 135 159 IPR003591 -
Trre13g02246 887 SMART LRR_typ_2 400 424 IPR003591 -
Trre13g02246 887 SMART LRR_typ_2 328 352 IPR003591 -
Trre13g02246 887 SMART LRR_typ_2 183 207 IPR003591 -
Trre13g02246 887 SMART LRR_typ_2 446 470 IPR003591 -
Trre13g02246 887 SMART LRR_typ_2 376 399 IPR003591 -
Trre13g02246 887 Gene3D Ribonuclease Inhibitor 182 258 IPR032675 -
Trre13g02246 887 FunFam MDIS1-interacting receptor like kinase 2 675 872 - -
Trre13g02246 887 Gene3D Phosphorylase Kinase; domain 1 554 674 - -
Trre13g02246 887 Pfam Leucine rich repeat 424 459 IPR001611 GO:0005515
Trre13g02246 887 FunFam Leucine-rich repeat receptor protein kinase MSP1 556 674 - -
Trre13g02246 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 720 732 IPR008266 GO:0004672|GO:0006468
Trre13g02246 887 SUPERFAMILY L domain-like 232 507 - -
Trre13g02246 887 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Trre13g02246 887 PANTHER LEUCINE RICH REPEAT KINASE 2 222 870 - -
Trre13g02246 887 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 221 519 - -
Trre13g02246 887 Pfam Protein kinase domain 596 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02246 Trre-Chr13 19857491 19860807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02246 84 768 Receptor kinase-like Gene Family AT4G08850 44.105 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g02246 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02246 - - gmx:100815688 1005.36