Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02245 ATGTGGACATTGAGGAGTTTAAAAGAGAGTAACCTAATTGGTTCCATTCCACAAGAAATTGGTTTGTTGACAAAACTCACTTATTTTGATTTGTCATCAAACTCTCTATCTGGTGTTATCCCTGAAACTATAGGTAACATGAGAAGACTAAATGGACTTCACCTTAATTATAACAAAAAGTTGTCTGGGCCAATTCCACAATCCTTGTGGAACATGTCTAGCTTGACCGATATCTCCCTCTATAACATGAATCTTTCTGGTTCAATCCCTGATTCCATACAAAATTTGGTTAGTGTGTCTTACCTTTCACTTGAATCCAATCAACTTTCTGGATCCATTCCTTCCACAATTGGAAACTTGAAAAACCTCACCCATTTGTATTTGGGAATGAATCCTCGTCTTTCTGGATCAATTCCTGCTTCTATAGGAAATTTGATCAATTTGCAAGCCTTTAGTGTCCAAAAAAGCAATCTATCTGGTACTATTCCTGCTACAATTGGGAATTTGAAACTGCTCACTATCTTTGAAGTAGCTAACAATAAACTTCATGGTAGAATTCCAGATGGACTTTACAACATTACTGATTGGTATTCCTTTATTGTGTCTGGGAATGATTTTGTTGGGCATTTGCCGTCTAAAATATGTTCTGGTGGAAAATTATATAACTTAAATGCTAATCAAAACCGTTTCACTGGTCCGGTACCAACAAGTTTGAAAGACTGCCCTACCGTTGAAAGAATTAGACTTGACGGAAATTTGATAGAAGGTGATATAGCACGAGATTTTGGTGTGTATCCGCTATTGGATTACATTGATATGAGTGACAATAAACTTCATGGACACATATCACCAAATTGGGGGAAGTCTCCTAATCTTAATGCCTTCATAATATCTAACAATAATGTTTCTGGTGGTATACCATTAGAACTTATTGCCTTACCCAAGCTAGGTAAGCTTCATCTTTCTTCAAATCAATTGACTGGGAAACTTCCAAAGGAATTAGGAGACATGGAATCATTATTTGAACTCAAGATAGGTAATAATCATTTCACAGATAGCATCCCAACAGAAATTGGATTACTTCAAAGACTTGCAGAGTTGGATATCGGAGGCAATGAGTTGAGTGGCACCATACCGGAAGAAATTGTGAAGCTACCAAGGCTACGAATATTGAATTTGAGCAGAAACAAAATCGAAGGAAGTATTCCCTTTCATTTTGGTTCAGCTTTGGAGTCACTTGATCTTAGTGGCAATTTTTTGAATGGAACAATACCTACATCTCTTGCAAACTTGGTGATGTTGTCAATGTTGAATCTCTCGCACAATATACTTTCAGGAACTATTCCTCAAAATTTTAAAAGGAATTTGGTTTTTGTTAATGTATCAGACAACAAGTTAGAAGGTCCACTTCCGAAAATTCCGGCTTTTCTTGATGCTTCATTTGAATCATTCAAAAATAATAAAGGCTTATGCGGAAATATCACAGGTTTGAATTCTTGTCCCACAAACCATAGCAAAAATGTCCTCCAAATCGTATTCATTGCGCTAGGAGCTCTTATATTAGTGTTGTGTGCTATTGGAATTTCGATGTATATTTTGCATCAAAGGCAAAAACCAAAGGAAGAGAGCCAAACTGTAGAAGAAGCACAAAGGGGAGTACTATTTTCCATCTGGAGTTATGATGGGAAAATGATGTTTGAAAATATCGTTGAAGCGACTGAGAACTTTGATGACAAATATCTCATTGGAGTTGGAAGTCAAGGAAATGTTTACAAGGCAGAATTGTCTGCAGGTATGGTTGTTGCGGTGAAGAAACTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACTTTGACAGGAATCAAACACAGGAACATCATAAAGCTTTATGGATTTTGCTCACATTCTAAGTTTACATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACACAAGCTGCTGAATTTGATTGGGAAAAGAGAGTGAATGTTGTTAAAGGTGTGGCCAACGCTTTGTCCTATTTGCATCATGATTGCTCACCTCCTGTTATTCATCGCGATATATCGAGCAAAAATGTTCTTCTTAATCTTCACTATGAAGCTCATGTATCCGACTTTGGGACCGCTAAGTTTCTAAAGCCTGGTTTACTAAGTTGGACCCAATTTGCAGGCACTTTTGGTTATGCAGCTCCAGAGTTGGCACAAACAATGGAAGTGGATGAGAAATGTGATGTATACAGCTTTGGAGTACTTGCTCTGGAAATCATAATGGGAAAGCATCCTGGAGATCTCATTTCATTATTTTTGTCATCATCTACAAGGCCAATGGCAAATAATATGTTGCTGATAGATGTTTTGGATGAACGACCTCAACAAGTTATGAAACCAGTTGATGAGGAGGTGATGTTGATTACCAGGTTGGCATTTGCTTGCTTGAGTCAAAATCCACATTCTCGTCCAACCATGGAACAAGTATCTAAGATGCTTGCAGCAGGAAAATCACCTTTTAAGAACCAACTTTCCATGATTAGACTAGGACAACTTCAATAA 2607 0.3709 MWTLRSLKESNLIGSIPQEIGLLTKLTYFDLSSNSLSGVIPETIGNMRRLNGLHLNYNKKLSGPIPQSLWNMSSLTDISLYNMNLSGSIPDSIQNLVSVSYLSLESNQLSGSIPSTIGNLKNLTHLYLGMNPRLSGSIPASIGNLINLQAFSVQKSNLSGTIPATIGNLKLLTIFEVANNKLHGRIPDGLYNITDWYSFIVSGNDFVGHLPSKICSGGKLYNLNANQNRFTGPVPTSLKDCPTVERIRLDGNLIEGDIARDFGVYPLLDYIDMSDNKLHGHISPNWGKSPNLNAFIISNNNVSGGIPLELIALPKLGKLHLSSNQLTGKLPKELGDMESLFELKIGNNHFTDSIPTEIGLLQRLAELDIGGNELSGTIPEEIVKLPRLRILNLSRNKIEGSIPFHFGSALESLDLSGNFLNGTIPTSLANLVMLSMLNLSHNILSGTIPQNFKRNLVFVNVSDNKLEGPLPKIPAFLDASFESFKNNKGLCGNITGLNSCPTNHSKNVLQIVFIALGALILVLCAIGISMYILHQRQKPKEESQTVEEAQRGVLFSIWSYDGKMMFENIVEATENFDDKYLIGVGSQGNVYKAELSAGMVVAVKKLHLVTDEEMSTFSSKSFMSEIETLTGIKHRNIIKLYGFCSHSKFTFLVYNFLEGGSLDHILNNDTQAAEFDWEKRVNVVKGVANALSYLHHDCSPPVIHRDISSKNVLLNLHYEAHVSDFGTAKFLKPGLLSWTQFAGTFGYAAPELAQTMEVDEKCDVYSFGVLALEIIMGKHPGDLISLFLSSSTRPMANNMLLIDVLDERPQQVMKPVDEEVMLITRLAFACLSQNPHSRPTMEQVSKMLAAGKSPFKNQLSMIRLGQLQ 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02245 868 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 193 504 - -
Trre13g02245 868 Pfam Protein kinase domain 578 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02245 868 Gene3D Ribonuclease Inhibitor 201 509 IPR032675 -
Trre13g02245 868 ProSitePatterns Tyrosine protein kinases specific active-site signature. 702 714 IPR008266 GO:0004672|GO:0006468
Trre13g02245 868 Gene3D Ribonuclease Inhibitor 74 200 IPR032675 -
Trre13g02245 868 Pfam Leucine rich repeat 25 81 IPR001611 GO:0005515
Trre13g02245 868 FunFam MDIS1-interacting receptor like kinase 2 657 854 - -
Trre13g02245 868 SUPERFAMILY Protein kinase-like (PK-like) 560 848 IPR011009 -
Trre13g02245 868 Gene3D Ribonuclease Inhibitor 3 73 IPR032675 -
Trre13g02245 868 Gene3D Phosphorylase Kinase; domain 1 535 656 - -
Trre13g02245 868 PRINTS Leucine-rich repeat signature 26 39 - -
Trre13g02245 868 PRINTS Leucine-rich repeat signature 385 398 - -
Trre13g02245 868 ProSiteProfiles Protein kinase domain profile. 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02245 868 Gene3D Transferase(Phosphotransferase) domain 1 657 861 - -
Trre13g02245 868 PANTHER LEUCINE RICH REPEAT KINASE 2 118 852 - -
Trre13g02245 868 Pfam Leucine Rich Repeat 410 431 IPR001611 GO:0005515
Trre13g02245 868 SUPERFAMILY L domain-like 9 211 - -
Trre13g02245 868 FunFam Leucine-rich repeat receptor protein kinase EMS1 3 91 - -
Trre13g02245 868 SUPERFAMILY RNI-like 155 504 - -
Trre13g02245 868 FunFam Leucine-rich repeat receptor protein kinase MSP1 538 656 - -
Trre13g02245 868 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 92 190 - -
Trre13g02245 868 SMART LRR_typ_2 96 120 IPR003591 -
Trre13g02245 868 SMART LRR_typ_2 313 337 IPR003591 -
Trre13g02245 868 SMART LRR_typ_2 385 409 IPR003591 -
Trre13g02245 868 SMART LRR_typ_2 23 46 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02245 Trre-Chr13 19845983 19848869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02245 12 750 Receptor kinase-like Gene Family AT4G08850 44.695 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g02245 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02245 - - gmx:100815688 1124