Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02236 ATGACCAAAATAAATGTTTTGAACTTGTCATTAAACCCACTTGAAGGTTCCATCCCCAAAGAAATATGGAAATTGAGGAGTTTAAAAGGCCTTGATCTTTCTGTATGTAAGCTAAGTGGAGAAATTCCTAATTCTTTAGGAAACTTGACCAATCTCTCATATCTAGATTTCAGTGACAACAAAAACTTTTCTAGTGGTTACATTCCTCATGAGATTGGGAAATTGAACCACTTGGAGTATCTAGGTATTGCAGGTTGTAACCGTGTTGGTCCCATTCCCCAAGAAATTGGAATGTTGACAAACCTTGGTGTTATGGAATTGTCAAGGAACGCTCTATCTGGTACCATCCCACCAACATTTGGTAACCTGACCAGTTTAAATGAACTTTACCTTTCAAATAACACATTGTCCGGAACTATCCCACCCTCCTTTTGGAACATGTCTTACTTATCCAATCTCTGGCTTGATAAAAATAATCTTTCTGGATCAATTGCTCCTTCTATACAAAACATGGTCAATTTGAATGATCTTAGACTTCTTTACAACCACTTTTCTGGACCTATTCCTTCCACCATCGGAAACTTGACAAAGCTAACATATTTAAATTTTATGTCTAATAATTTTTCTGGATCAATTCCTACTTCTATTGGAAATCTAATCAATATGTTAGTCATATGTTTTCGAGAAAACAATCTTTCTGGAACTATTCCTGCTATGATTGGAAATTTGACAAAGCTAACTGGTTTAGAATTAGCCACCAATAAATTTCATGGTAGAATTCCACAAAGCCTATATAACTTTACCAAATTTGAATCCTTTATATTAGACAAGAATGATTTCATTGGCCATTTGCCACCTCAAATATGTTCTGGTGGATCTCTACTATTCTTCACTGTTTTCAACAACCATTTCACTGGTCCAGTACCAAGAAGTTTGAAGAACTGCTCTAGTATTGAAAGACTTATGCTTCAGGGTAATCAAATAGAAGGAGATATAGCACAAGATTTTGGTGTATATCCGAATTTGAATTACATTGATCTAAGTAACAATAAATTTTATGGTCATATTTCACCAAACTGGGGGAAGTGTCGTAATCTTAATAACTTCATGATTTCCAACAATAATATCACCGGTGGCATACCATTAACAATTTTGGAGGCAAAGAAGCTAGGCAAGCTCCACCTTTCTTCAAACCACTTAACGGGAAAACTTCCAAAGGAGCTTGGATACCTGAAATCATTACTTGAAGTTAAGATCAACAACAATCATCTTTCAGGAAATATTCCAAGTGAAATTGGATTGCTACAAAATCTTGTAGATTTTGATGTAGGAGGAAACATGTTGAATGGAACAATACCAAAAGAAGTTGTGAAGTTACCCTTGTTACGAAACTTGAACTTGAGCAAAAACAAAATTGAAGGGAGAATACCGTCAGACTTTTCCATTTCACAGCCACTTGAAACTCTTGATCTTAGCGGGAATTCGTTGAGTGGAACAATACCAACAATATTAGGAGAGTTGAAGCAATTGCAAAAGCTGAATCTGTCATCCAATAATCTTTTTGGCACCATTCCATCCAGTTTTGAGGATGTCATGTCAAGCTTGACCGATATCAACATATCAAACAACCATTTGGAAGGGAGGCTACCAAATAATCAAGCCTTTCTCAAGGCTCCAATTGAATCATTAACAAATAACAAAGGTTTGTGTGGTAATCGCACTGGTTTAGAGCTTTGCACAACCAACCACAGTCAAAAGAGCCACAAGACTCTCTTACTAGTATTGTTTGTTATCTTAGGTGCTCTAGTACTAGTATTTTGTGGGGTGGGAGTTTTAATGTATATTCTTTATCGGAGAGCAAGAAAGGAAAAAACCAAGGATAAAGATTCAAACGAAGCACCAGCAGAAGAAGTCTTTTCCATATGGAGCCATGATGGAAAAATGCTATTTGAAAATATCATTGAAGCCACCAATAACTTTGATGAAGATTATCTCATTGGAGTAGGAGGGGAAGGTTCTGTTTATAAGGCTAAGTTGTCTGCAGATATGGTTGTTGCAGTGAAGAAACTTCATTCGGGAATAGATGGGGAGAGGCCCAATTTCAAAGCATTTGAAAATGAAATTCAAGCTTTGACGGAAATCAAGCATCGTAATATCATAAAGCTCTACGGATATTGCCAGCATTCAAGATTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGGACTTTGACAAAAATGCTAAACAATGACTCGCAAGCTATTGAATTTGATTGGGAAAAGAGGGTAAATGTGGTTAGAGGTGTGGCTAATGCTTTGTCCTATATGCATCATGAGATCACACCTCCAATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTATCTTATGAAGCTCAACTTTCGGATTTTGGAACAGCTAAGTTTCTAAAGTGTGATTCAAGCAGCTGGACAACATTTGCAGGCACCTTTGGATATGCAGCTCCAGAATTCGCCCAAACCATGGAAGTGACTGAGAAGTGTGACGTTTACAGCTTTGGAGTTCTTTGTTTTGAAATCCTTCTGGGAAGCCATCCAGCAGATTTTGTTTCTTCATTGTTCTCATCATCTACAGCAACAATGACTTATAATTTGTTGTTGATTGATGTATTAGACCAACGCCTTCCTCAACCTACCAATTCAATTGTTGGGGATATCATCTTGATTACAAGATTGGCATTTTCTTGCTTGAGTGAAAATCCATCTTCTCGCCCCACCATGGATTATGTTTCAAAAGAACTTTTGATGAGAAAATCACAATCACCTTTAGTGGAACAGTTCCCTCAAATCAGACTTGGACAACTCCACTAA 2859 0.3694 MTKINVLNLSLNPLEGSIPKEIWKLRSLKGLDLSVCKLSGEIPNSLGNLTNLSYLDFSDNKNFSSGYIPHEIGKLNHLEYLGIAGCNRVGPIPQEIGMLTNLGVMELSRNALSGTIPPTFGNLTSLNELYLSNNTLSGTIPPSFWNMSYLSNLWLDKNNLSGSIAPSIQNMVNLNDLRLLYNHFSGPIPSTIGNLTKLTYLNFMSNNFSGSIPTSIGNLINMLVICFRENNLSGTIPAMIGNLTKLTGLELATNKFHGRIPQSLYNFTKFESFILDKNDFIGHLPPQICSGGSLLFFTVFNNHFTGPVPRSLKNCSSIERLMLQGNQIEGDIAQDFGVYPNLNYIDLSNNKFYGHISPNWGKCRNLNNFMISNNNITGGIPLTILEAKKLGKLHLSSNHLTGKLPKELGYLKSLLEVKINNNHLSGNIPSEIGLLQNLVDFDVGGNMLNGTIPKEVVKLPLLRNLNLSKNKIEGRIPSDFSISQPLETLDLSGNSLSGTIPTILGELKQLQKLNLSSNNLFGTIPSSFEDVMSSLTDINISNNHLEGRLPNNQAFLKAPIESLTNNKGLCGNRTGLELCTTNHSQKSHKTLLLVLFVILGALVLVFCGVGVLMYILYRRARKEKTKDKDSNEAPAEEVFSIWSHDGKMLFENIIEATNNFDEDYLIGVGGEGSVYKAKLSADMVVAVKKLHSGIDGERPNFKAFENEIQALTEIKHRNIIKLYGYCQHSRFSFLVYKFLEGGTLTKMLNNDSQAIEFDWEKRVNVVRGVANALSYMHHEITPPIVHRDISSKNVLLDLSYEAQLSDFGTAKFLKCDSSSWTTFAGTFGYAAPEFAQTMEVTEKCDVYSFGVLCFEILLGSHPADFVSSLFSSSTATMTYNLLLIDVLDQRLPQPTNSIVGDIILITRLAFSCLSENPSSRPTMDYVSKELLMRKSQSPLVEQFPQIRLGQLH 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02236 952 Gene3D Transferase(Phosphotransferase) domain 1 739 942 - -
Trre13g02236 952 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 268 583 - -
Trre13g02236 952 SUPERFAMILY Protein kinase-like (PK-like) 644 931 IPR011009 -
Trre13g02236 952 ProSitePatterns Tyrosine protein kinases specific active-site signature. 784 796 IPR008266 GO:0004672|GO:0006468
Trre13g02236 952 Pfam Leucine Rich Repeat 27 49 IPR001611 GO:0005515
Trre13g02236 952 Pfam Leucine Rich Repeat 509 529 IPR001611 GO:0005515
Trre13g02236 952 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Trre13g02236 952 FunFam Leucine-rich repeat receptor protein kinase MSP1 621 738 - -
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 162 258 IPR032675 -
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 64 161 IPR032675 -
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 356 451 IPR032675 -
Trre13g02236 952 SUPERFAMILY L domain-like 68 353 - -
Trre13g02236 952 PANTHER LEUCINE RICH REPEAT KINASE 2 151 937 - -
Trre13g02236 952 FunFam Inactive leucine-rich repeat receptor-like protein kinase 1 263 - -
Trre13g02236 952 Gene3D Phosphorylase Kinase; domain 1 619 738 - -
Trre13g02236 952 SUPERFAMILY L domain-like 308 571 - -
Trre13g02236 952 PRINTS Leucine-rich repeat signature 486 499 - -
Trre13g02236 952 PRINTS Leucine-rich repeat signature 507 520 - -
Trre13g02236 952 FunFam MDIS1-interacting receptor like kinase 2 739 936 - -
Trre13g02236 952 ProSiteProfiles Protein kinase domain profile. 660 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 259 355 IPR032675 -
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 452 579 IPR032675 -
Trre13g02236 952 Gene3D Ribonuclease Inhibitor 1 63 IPR032675 -
Trre13g02236 952 Pfam Protein kinase domain 663 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02236 952 SUPERFAMILY L domain-like 2 61 - -
Trre13g02236 952 SMART LRR_typ_2 25 49 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 459 483 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 123 146 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 532 557 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 411 435 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 507 530 IPR003591 -
Trre13g02236 952 SMART LRR_typ_2 99 122 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02236 Trre-Chr13 19699233 19702670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02236 4 832 Receptor kinase-like Gene Family AT4G08850 44.869 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g02236 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02236 - - gmx:100815688 1273.07