Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02210 ATGGAAGAGGGAAAACATAAATCGAGGAAAGAAGACGGTGATTATAAGCGGAGTCATCGTGATCGAGATCGTGAAAGAACTGGTGAAAGAAGCAAGGATAGAAGTGATGGTAGGCATAAGGATAATAGGGAGAAGAGGGATCGTGAATTTCGACGGCACGACAGAGAGAAAAGCACGGATTTTGAGGATGAGCATGATAGAGACAGGGAGAAGCGCAGAGATGTTAAAGAGAAGGATAGGGCACAAGTTCATGATTTCGACCGAGAAAAGAGAGACAGGAAAAGGGAAAGAGATAGAGAAGAGGAAGAAAAGGAGAGAGTTAGAGAGAAAGAAAGAGAGAAGGCAGAGAAGGAAAAAGAGAGATTAAGGGAGAAAGAAAGAGATAGGGAAGATAAGGAAAAGGAGAGAATGAGGGAGAAAGAGAGAGAAAGGGAAAGAAAGGAGAAGGAGAGGATTAAAGAGAAAGAAAGGGCAAGGGAAAGGAGGAATCATGAGAGAGAGAAGGAAAAAGAAAAGGAAAGAGATAAAGGAAAGAGAGGACGGGAGCGGGAGTGGGAGAAGCATAGAGATGTTGATAGCGAAGATAGTGATGGTGAGTTGAGGGAGAGAAATAGAAAGCGGCATAAGAAAGAGGGTGACAATTATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAGGAAAGTTGATGGGATTAACAGAAGCCCTAGGAGAAAGAGTGATGGAGATTACTCTGATTCCAAAGAGAAAGAGAAAAGACTTACCCGTGAGGAGGAAATGGAAGTTGAACAAAAGAGGTTGGATGGTGAAATGGAAAAACGAAGGAGGAGAGTTCAAGAGTGGCAAGAGCAAAAGAGGAAGGAGGAAGAGGCAGAAAGAGAAAAGCAAGGTGAAGCAAGTGTTGCTGAACTAGAGTCTGGAAAGGCATGGACACTTGAAGGGGAGGATTCTGATGATGAAGATGGAACAGGTAGACATACAAGTATGGATGTAGACGAAGACAATAAACTTGCTGATAATGAACCTAGGGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTACGTCCGATTTACATAATGGAGATGCTGGTGCTCCTGCTGACGATGAGATTGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGTTGCACAATGCTGTTAACTCAACACCTTCTGATAAAGCTTCTATCTTGAAACCCAAGGATAAAGAGGACGAGCGTAGTAATGGTCGACAATCAAGGAAAGGTTCAAATAAATCTCTTGGCAGGATAATTCCCGGTGAAGAGTCCGACTCAGATTATGAAGATCCTGATCTTGAGGGGGATCCATTAGATGAAGATGACGACGAGTTCATGAAGAGAGTGAAGAAAACAAAAGTTGAAAAGCTTTCTATAGTTGACCACTCAAAGATCGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTCTTGAAGAAGTTTTATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGAGACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCGGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCCACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTTACAAAAGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCCGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTGTGTACTCCAGGTAGGATGATCGACATATTGTGCACCAGTAGTGGAAAAATAACTAACCTGCGCAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTATTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATGCATTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGGTGGTGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTAAAATCCCTTGCCGATGGCTTTATGGCAAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGTAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGAAGATGGTATTAGGAAGGCTGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGACTCCAGTCTTGCCTGGGACAGGGCTACCCGCTGCTACAAATGATGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACCTGCAGCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACCATAAGGGGACAGTATTTCCAACCTGGCAAAGTCACAGGACCTGGGGATCGCAAACTCCACTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGCTTTGGAAGACATCACTAACCATGCTTTGCAACTACCCGGTGGAACTCAACCAGGCAAATACTCGGTTGTATAA 3381 0.4321 MEEGKHKSRKEDGDYKRSHRDRDRERTGERSKDRSDGRHKDNREKRDREFRRHDREKSTDFEDEHDRDREKRRDVKEKDRAQVHDFDREKRDRKRERDREEEEKERVREKEREKAEKEKERLREKERDREDKEKERMREKERERERKEKERIKEKERARERRNHEREKEKEKERDKGKRGREREWEKHRDVDSEDSDGELRERNRKRHKKEGDNYKGREKEKSSSKSNRKVDGINRSPRRKSDGDYSDSKEKEKRLTREEEMEVEQKRLDGEMEKRRRRVQEWQEQKRKEEEAEREKQGEASVAELESGKAWTLEGEDSDDEDGTGRHTSMDVDEDNKLADNEPRESMVVDVDNGTVTSDLHNGDAGAPADDEIDPLDAFMNSMVLPEVEKLHNAVNSTPSDKASILKPKDKEDERSNGRQSRKGSNKSLGRIIPGEESDSDYEDPDLEGDPLDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEISKMTLEEVLLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEGGARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEEDGIRKAGGDISQHPALAQTPVLPGTGLPAATNDGAARAALAAINLQLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITIRGQYFQPGKVTGPGDRKLHLFIEGPSEQSVKRAKVELKRALEDITNHALQLPGGTQPGKYSVV 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02210 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 556 734 IPR014001 -
Trre13g02210 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 906 IPR001650 -
Trre13g02210 1126 Coils Coil 266 300 - -
Trre13g02210 1126 SMART helicmild6 786 867 IPR001650 -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 941 955 - -
Trre13g02210 1126 FunFam probable ATP-dependent RNA helicase DDX17 487 737 - -
Trre13g02210 1126 Pfam Helicase conserved C-terminal domain 759 867 IPR001650 -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 311 348 - -
Trre13g02210 1126 Coils Coil 83 175 - -
Trre13g02210 1126 Gene3D - 736 909 IPR027417 -
Trre13g02210 1126 CDD KH-I_AtRH42_like 1024 1125 - -
Trre13g02210 1126 CDD SF2_C_DEAD 746 876 - -
Trre13g02210 1126 PANTHER RNA HELICASE 470 945 - -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 1 303 - -
Trre13g02210 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 882 IPR027417 -
Trre13g02210 1126 SMART ultradead3 544 749 IPR014001 -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 440 456 - -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 405 422 - -
Trre13g02210 1126 CDD DEADc_DDX46 514 735 - -
Trre13g02210 1126 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 525 553 IPR014014 GO:0003724
Trre13g02210 1126 MobiDBLite consensus disorder prediction 941 980 - -
Trre13g02210 1126 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 680 688 IPR000629 -
Trre13g02210 1126 Coils Coil 1093 1113 - -
Trre13g02210 1126 Gene3D - 478 735 IPR027417 -
Trre13g02210 1126 MobiDBLite consensus disorder prediction 1 375 - -
Trre13g02210 1126 Pfam DEAD/DEAH box helicase 550 721 IPR011545 GO:0003676|GO:0005524
Trre13g02210 1126 MobiDBLite consensus disorder prediction 393 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02210 Trre-Chr13 19460219 19463599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02210 523 876 Eukaryotic Initiation Factors Gene Family AT3G19760 33.520 4.98e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02210 K12811 - gmx:100784306 1446.41