Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02203 ATGGCTTCCACCAACAATGACTCTGATTTTGCATATTTGGAACCCATTCAACAATACCTTCTTTTTGATGATTCCAGCATTCTAACATCTCATCAACCTTTACCAAGCCCTAAAAGTGACAACGATTTGGACATGAAAGTTGAGGTGCGTGAAGTAAGCGCGCCTCCATCATGGAAGCGATACAAGGGTGTAAGGCGTAGGCCGTGGGGGAAGTTCGCGGCAGAGATCAGAGATCCAAAGAAGAATGGTGCTAGAGTTTGGCTTGGTACTTATCTGACTGAGGAGGAAGCAGGTTTGGCTTACGACAAAGCTGCATTCAAGATGCGCGGTCAAAAAGCCAAACTTAATTTTCCCCACCTCATTGGCTCTGATGAGTTGACATCAGAGCCAAAGCGAGAGGTTGCTTTGAAAAGGGAATCACCCGAGCCTTCTTCATCCGAGGGAAGTTCTGAGTCATCGTCACCAGGGTCGAAGAGGAGGAGAGGCATGGTTGACTTACTTAACAAATTAGCCAAGAATAAAAATCAAGCCATGGTGGTTGAGATTGAAAAGGCCTCACAAGCAAATGATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTATTCTGGAGCTCATAG 627 0.453 MASTNNDSDFAYLEPIQQYLLFDDSSILTSHQPLPSPKSDNDLDMKVEVREVSAPPSWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGQKAKLNFPHLIGSDELTSEPKREVALKRESPEPSSSEGSSESSSPGSKRRRGMVDLLNKLAKNKNQAMVVEIEKASQANDDFEQWVNELNDCTLFWSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02203 208 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Trre13g02203 208 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Trre13g02203 208 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Trre13g02203 208 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Trre13g02203 208 MobiDBLite consensus disorder prediction 142 157 - -
Trre13g02203 208 PANTHER DNA-BINDING DOMAIN 49 182 IPR044808 GO:0003700|GO:0009873
Trre13g02203 208 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Trre13g02203 208 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre13g02203 208 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Trre13g02203 208 MobiDBLite consensus disorder prediction 128 167 - -
Trre13g02203 208 FunFam Ethylene-responsive transcription factor 2 59 119 - -
Trre13g02203 208 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02203 Trre-Chr13 19355982 19356608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02203 60 147 AP2-EREBP Transcription Factor Family AT2G44840 71.591 2.29e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g02203 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02203 K09286 - gmx:102663872 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02203 13 19355982 19356608 Trre13g02203 13 19355982 19356608 ECH