Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02202 ATGGCTTCCACAACCAAAGTCTCAGATTTTGCATCTTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCTAGCCTTCTTATTTCATCATCTGATGATCAATCTTTACCAAGCCCTAAAAGTGACAACGATTCCGACACAATTGTAGAGGCGCGTGAAATAACTGCACCTCCTACTTGGAAGCGATACAAGGGCGTGAGGCGTAGGCCATGGGGTAAGTTCGCGGCAGAGATTCGAGATCCAAAGAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATCTGACCGAGGAGGAAGCAACTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAAGCCAAACTTAATTTTCCCCACCTTGTTGACTCTGATGTGTTGACATCAGAGACAAAGAGGGAGGTGGTTTTGAAACGGGACGCGCCGGAGCCTTCTTCATCAGAGGGAAGTTGCGAGTCAACGTCACCGAGGTCGAAGAGGAGAAGGGGCATGGTTGACCTACTTAACAAATTAGCGAAGAATAAAAATCAAGCCATGGTGTTTGAAATTGAAAAGGCCTCACAAGCAAATGATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTAATCTGGAGCTCATAG 636 0.4481 MASTTKVSDFASLEHIQQYLLFDDSSLLISSSDDQSLPSPKSDNDSDTIVEAREITAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEATLAYDKAAFKMRGQKAKLNFPHLVDSDVLTSETKREVVLKRDAPEPSSSEGSCESTSPRSKRRRGMVDLLNKLAKNKNQAMVFEIEKASQANDDFEQWVNELNDCTLIWSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02202 211 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Trre13g02202 211 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Trre13g02202 211 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Trre13g02202 211 FunFam Ethylene-responsive transcription factor 2 62 122 - -
Trre13g02202 211 Gene3D AP2/ERF domain 62 123 IPR036955 GO:0003700|GO:0006355
Trre13g02202 211 PANTHER DNA-BINDING DOMAIN 48 184 IPR044808 GO:0003700|GO:0009873
Trre13g02202 211 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Trre13g02202 211 MobiDBLite consensus disorder prediction 32 53 - -
Trre13g02202 211 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Trre13g02202 211 MobiDBLite consensus disorder prediction 140 164 - -
Trre13g02202 211 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Trre13g02202 211 CDD AP2 62 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02202 Trre-Chr13 19338828 19339463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02202 63 150 AP2-EREBP Transcription Factor Family AT2G44840 67.045 1.66e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g02202 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02202 K09286 - gmx:102663872 227.254