Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02190 ATGAAGATATTAAGCCATGGATATGTTTTGTTATTCAGCCTCTTTGTAATAATCTCCATCGCTACTATTATTAATGGAGATGATGAGACAGATTACATGTTCCAACTTATGAAATCACTAACCCCAACTCCCACAGGATGGTCTAACAAAACTCACCACTGCAAATGGAAAGGAATTTCTTGCAACTCAACTACTCAAGCTGTTACATCCATCATCCTCCCATCAAGTTCACTCACAGGAACACTCCCTCCCTATCTCAACAATACTCTCACTAATCTCACCCACATCGTTCTCCATAATAACTCACTCAATGGTCCTTTGCCTTATTTTACTAACCTCTTCTTGCTCCAAACTGTGTCCCTTGGTAACAATAAATTCTCTTCCGTCCCAGACAATTGCTTTCTAGACATACAACATCTGAGAACCCTCAACCTTAGCAATAACCTGAATCTCTCCGGCTGGGAATTTCCTACCGATGATTTACTTTACTCCGAGTATTTGGACACCCTCGATCTCGAAGCTACGAATATGATAAGCAAATTAGATCCGGACATACTCTTTTTATTTGAAAATTTGCATATTTTTTTTATTTCTCACAACAAAATACGTGGAAATCTACCCCAATCTCTCAGGCAATCTCGAATAAGGTATTTACGGCTTAACAACAACAGATTTGATGGTCCAATATCCTTTATATCAAGCATGAGTAATTTATTTCAAGCGTGGCTTCACAATAACAGCTTCACAGGTCGAATTCCCAACATGTCCAATTGTACTAATTTGTTTGATTTGCAGCTTCACTCAAATGGCTTAACTGGTTTGATCCCACCTTCGTTACTCACTCTACCTAGCTTGAGCATCATCTCTTTGGGAGACAATATGCTTCAAGGACGGATACCTGTGTTTCACAAGGGTGTTAAAGCAACTTTGGAACCAAATTCCTTTTGTCGAAGCGATGGTGGACCATGTGATCCCCAAATTATGATTTTGCTTGATATTTTTGAAGCTTTAAGGTCTCCTGTGTTCTTGCGGAATCCGCCAGTCACTGGAAACGACGCTTGTGCCCTAACTCCCATGTTGTTTTATAGAGCTATCGATCGAGTATTGGGCGGTAGGTTAATGATTAAGTGTCAAAGAGAGAAGATTGTTAGTTTTGAGATCTGGGATTTGGTTTTAAGAGGAACCATTTCACCCGCATTTTCCAAATTAAAAAGTTTAGTGAACTTGACTCTTGCTGACAATTATTTGAATGGTTCAATACCAGACAGTCTTAAGACTTTGCCTCAACTTCAGCTTCTTGATGTTTCTAATAATAATCTAACAGGAGTTATTCCCAAATTTTCACCGAAGGTTAAGTTAAATGTCACAGGCAATGCTTTTCTTGCCCCAAATATGTCTAGACAAAGTGATGCTCAAGCTAGAGGTTCATCTAAAGCAAACCCTAGACCAGTAATTTGGATTGCAGGTCAAGGAGGATATGGTGTTGTTTACAAAGCAAGTTTACCTGATGGTCGTCAAGTGGCAGTGAAAGTGATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTAGCTAGTATTAGTAGGACTTCACATGTGAACATCGTTTCACTTTTGGGATTTTGTTTTGAAAACAAAAGAGCACTAATATATGAATTCATGTCCAACGGATCATTGGATAAGTTTATCCTTAAAAGAGGATTTCCTGATGCAATTTGTAGCTTGGATTGGAACACAATGTACCAAATTGCAATCGGAATTGCTCGAGGTCTAGAATACTTGCATCTAGGATGTATTTCAAGAATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAAACTTTTGTCCAAAAATTTCCGATTTTGGGCTGGCTAAAATATGCCAAAGGAATGATAGTGTTGTATCAATAATTGGCACAAGAGGAACAATAGGATACATAGCACCAGAAGTATTTAGCAGAACATACGGTGGAGTTTCTCACAAGTCTGACGTATACAGTTATGGTATGTTAATTCTAGAAATGATTGGAGGGAGAAAGAATTATGACACTAGAGGTTCATGTACTTCTGAAATGTACTTTCCAGACTGGATTTATAAGGATCTAGAACAAGGTAATAACCCTGACAATTGTATAGCAAACTCAGATGAAGAAAATGACATGGTGAGACAGATTACTATGGTGAGTTTATGGTGCATTCAAATGAATCCATCAGATAGACCATCAATGAGTAAAGTATTAGAAATGCTACAAGGACCACTTCAATCAGTGTCATATCCTCCAAAGCCTTTCTTACATTCTCCTGAAGTGTCATCGTTACAAACTTCATATGTGTCTTCCATCAATTTGTTAAATACAAATTAA 2379 0.3779 MKILSHGYVLLFSLFVIISIATIINGDDETDYMFQLMKSLTPTPTGWSNKTHHCKWKGISCNSTTQAVTSIILPSSSLTGTLPPYLNNTLTNLTHIVLHNNSLNGPLPYFTNLFLLQTVSLGNNKFSSVPDNCFLDIQHLRTLNLSNNLNLSGWEFPTDDLLYSEYLDTLDLEATNMISKLDPDILFLFENLHIFFISHNKIRGNLPQSLRQSRIRYLRLNNNRFDGPISFISSMSNLFQAWLHNNSFTGRIPNMSNCTNLFDLQLHSNGLTGLIPPSLLTLPSLSIISLGDNMLQGRIPVFHKGVKATLEPNSFCRSDGGPCDPQIMILLDIFEALRSPVFLRNPPVTGNDACALTPMLFYRAIDRVLGGRLMIKCQREKIVSFEIWDLVLRGTISPAFSKLKSLVNLTLADNYLNGSIPDSLKTLPQLQLLDVSNNNLTGVIPKFSPKVKLNVTGNAFLAPNMSRQSDAQARGSSKANPRPVIWIAGQGGYGVVYKASLPDGRQVAVKVINESKGNGEEFINEVASISRTSHVNIVSLLGFCFENKRALIYEFMSNGSLDKFILKRGFPDAICSLDWNTMYQIAIGIARGLEYLHLGCISRILHLDIKPQNILLDENFCPKISDFGLAKICQRNDSVVSIIGTRGTIGYIAPEVFSRTYGGVSHKSDVYSYGMLILEMIGGRKNYDTRGSCTSEMYFPDWIYKDLEQGNNPDNCIANSDEENDMVRQITMVSLWCIQMNPSDRPSMSKVLEMLQGPLQSVSYPPKPFLHSPEVSSLQTSYVSSINLLNTN 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02190 792 PANTHER OSJNBA0070M12.3 PROTEIN 11 471 - -
Trre13g02190 792 Pfam Protein kinase domain 489 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02190 792 Gene3D Ribonuclease Inhibitor 369 464 IPR032675 -
Trre13g02190 792 Gene3D Phosphorylase Kinase; domain 1 488 556 - -
Trre13g02190 792 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Trre13g02190 792 FunFam Leucine-rich repeat receptor-like kinase 325 464 - -
Trre13g02190 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Trre13g02190 792 Gene3D Transferase(Phosphotransferase) domain 1 557 764 - -
Trre13g02190 792 SMART serkin_6 482 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02190 792 ProSiteProfiles Protein kinase domain profile. 482 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02190 792 Gene3D Ribonuclease Inhibitor 26 322 IPR032675 -
Trre13g02190 792 FunFam PR5-like receptor kinase 556 766 - -
Trre13g02190 792 SUPERFAMILY Protein kinase-like (PK-like) 488 755 IPR011009 -
Trre13g02190 792 SMART LRR_typ_2 427 449 IPR003591 -
Trre13g02190 792 SMART LRR_typ_2 90 112 IPR003591 -
Trre13g02190 792 SMART LRR_typ_2 113 136 IPR003591 -
Trre13g02190 792 SUPERFAMILY L domain-like 47 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02190 Trre-Chr13 19119994 19123057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02190 487 781 Receptor kinase-like Gene Family AT4G18250 57.895 1.38e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre13g02190 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02190 - - aip:107637472 638.647