Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02182 ATGGCTTCAATTTTATTTGGGATAAGAGAACCAACCCAGGTAATCCTTACTTATCACGAAAACAACTCAACATTTACATTGATAAATAATACCAATGTAACGAGCATCGATGAAGTTGAAGAAGGGTTGGGAGAAACAATCTTCCCATTTAACGACAACACTTATACCTTACATCCCTATGAAGACGATCAGTTGTTTGGTTGGGAACAGAAAGTAAGTAAGGCTTTGGCATGTAACACAAAGAATCAAGTTTTGAGGATACCGCCAAAAACTGCTAACAGTGCATTACGAGGAAGGAAGAACATAATCATTAAAACACAACATCAATTGGATGGAACCAAATGGAAAATCAATACTTATACAAGAGAGAATGGAAGACAGGAAAAACATTTTACTGAAGGATGGTATGCATTCAAGAAGGCAAACAATCTTCGAGAAGGAGACAAATTGCAATTTCAGCTTTCTGATCCAGCTGAAGTTATGGTAGTCGACATTGTTCGCTACAACAATTCAGGATAA 519 0.368 MASILFGIREPTQVILTYHENNSTFTLINNTNVTSIDEVEEGLGETIFPFNDNTYTLHPYEDDQLFGWEQKVSKALACNTKNQVLRIPPKTANSALRGRKNIIIKTQHQLDGTKWKINTYTRENGRQEKHFTEGWYAFKKANNLREGDKLQFQLSDPAEVMVVDIVRYNNSG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02182 172 ProSiteProfiles B3 DNA-binding domain profile. 70 169 IPR003340 GO:0003677
Trre13g02182 172 Pfam B3 DNA binding domain 79 167 IPR003340 GO:0003677
Trre13g02182 172 CDD B3_DNA 85 167 IPR003340 GO:0003677
Trre13g02182 172 Gene3D - 19 170 IPR015300 -
Trre13g02182 172 SUPERFAMILY DNA-binding pseudobarrel domain 82 162 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02182 Trre-Chr13 19057485 19058086 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02182 B3 4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02182 - K11942 tpra:123909626 165.622