Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02181 ATGACTTCAGGAAAAATGGCTTCAATTTTATTTGGGATAAGAGAACCAACCCAGGTAATCCTTACTTATCACGAAAACAACTCAACATTTACATTGATAAATAATACCAATGTAACGAGCATCGATGAAGTTGAAGAAGGGTTGGGAGAAACAATCTTCCCATTTAACGACAACACTTATACCTTACATCCCTATGAAGACGATCAGTTGTTTGGTTGGGAACAGAAAGTAAGTAAGGCTTTGGCATGTAACACAAAGAATCAAGTTTTGAGGATACCGCCAAAAACTGCTAACAGTGCATTACGAGGAAGGAAGAACATAATCATTAAAACACAACATCAATTGGATGGAACCAAATGGAAAATCAATACTTATACAAGAGAGAATGGAAGACAGGAAAAACATTTTACTGAAGGATGGTATGCATTCAAGAAGGCAAACAATCTTCGAGAAGGAGACAAATTGCAATTTCAGCTTTCTGATCCAGCTGAAGTTATGGTAGTCGACATTGTTCGCTACAACAATTCAGGATAA 534 0.367 MTSGKMASILFGIREPTQVILTYHENNSTFTLINNTNVTSIDEVEEGLGETIFPFNDNTYTLHPYEDDQLFGWEQKVSKALACNTKNQVLRIPPKTANSALRGRKNIIIKTQHQLDGTKWKINTYTRENGRQEKHFTEGWYAFKKANNLREGDKLQFQLSDPAEVMVVDIVRYNNSG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02181 177 Pfam B3 DNA binding domain 84 172 IPR003340 GO:0003677
Trre13g02181 177 CDD B3_DNA 90 172 IPR003340 GO:0003677
Trre13g02181 177 ProSiteProfiles B3 DNA-binding domain profile. 75 174 IPR003340 GO:0003677
Trre13g02181 177 SUPERFAMILY DNA-binding pseudobarrel domain 87 167 IPR015300 -
Trre13g02181 177 Gene3D - 24 175 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02181 Trre-Chr13 19057485 19058101 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02181 B3 4.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02181 - K11942 tpra:123909626 175.252