Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02180 ATGTCATCCTCATCAAACAACAGCAACCACAACAATCAATTTGACGAAATAGATCCAGACTATGCTATGTTTTTGGCAAACTATGATCCAAATTATGAACACCAAGACCATGATGATGACATAGATCCGGATTATGCTCGCTTCCTTGCCAATAATGGATTAAACAACCGATTTGTAGATGGAGAAGTTATTGATGCTGCAGCTCCTGTTATTGAAGACCAACAAAGTGCATCCAATTCTGTTAATCAAAATGAACCTGTATTTCAACTTCAACTTAACAATGTTAACAAAGCAAAACAAACACAAGTCACACTGCCACCCGATTTCAACCAGTACGTCAACAATTTCAAATTTCACAGTCTCTTACTCCAATTTGCGGACAATACTCATGCTAAGGTTCATTTAAAGTATTTAACCACTACACAGCAAAACTGCATCATTAAAAGAGGATGGAAGAAGTTTTGCCAGGACAACAACATAAGTTTTGGTGATACTTTAAAGTTCCGTTTTATAGAAAATGGTCAAAATGTTTGCAATGTGACCAAACTAAACCTTTAA 558 0.3584 MSSSSNNSNHNNQFDEIDPDYAMFLANYDPNYEHQDHDDDIDPDYARFLANNGLNNRFVDGEVIDAAAPVIEDQQSASNSVNQNEPVFQLQLNNVNKAKQTQVTLPPDFNQYVNNFKFHSLLLQFADNTHAKVHLKYLTTTQQNCIIKRGWKKFCQDNNISFGDTLKFRFIENGQNVCNVTKLNL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02180 185 Gene3D - 71 184 IPR015300 -
Trre13g02180 185 ProSiteProfiles B3 DNA-binding domain profile. 88 184 IPR003340 GO:0003677
Trre13g02180 185 SUPERFAMILY DNA-binding pseudobarrel domain 83 180 IPR015300 -
Trre13g02180 185 Pfam B3 DNA binding domain 89 176 IPR003340 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02180 B3 4.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02180 - K21075 tpra:123900143 117.087