Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02176 ATGTGTAGGTATTGGGATCTTGTTTGGAGTGCACCAAGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACAAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGATAAGTAA 303 0.3696 MCRYWDLVWSAPRIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLQGWPDFDMSETRITFKLRKDK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02176 100 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 100 - -
Trre13g02176 100 Pfam Rhamnogalacturonate lyase family 4 100 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02176 Trre-Chr13 18966154 18966636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02176 4 100 Polysaccharide Lyase AT1G09910 71.134 5.97e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02176 K18195 - gmx:100814185 189.504