Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02172 ATGAACCAATCCTATTATCATCATTCTTCTTCAATTATAATTTTAGTTTTCTACTTGACACTTTTGATGATCTCAATCATCAATATTCCAACATGTCTATGTCAAGATAATACCCAATACACGAACTGCAGCCACGCTTTTAACTGCGAAAGCAAAATCAGAAACTTAAAGTATCCGTTCTGGGGAGGAAACAGAAAACAATATTGTGGTAGTGTTGCTGCTGATCCTAATACAGAGCTCACATGCGAACAAAGTGTTCCAAAGATAACAATCAATTTTGCCAAATACCGTATTCTTGATTGGGACAATACAACACAGAAACTCACAGTTGCAAGGGACGATTACTCGCGTGGTGATGTTTGTGCTGTGAATAACAATTACAAGAACAGCTCATTTGATAACACACTGTTTCAACGTTATAACGGTGATGTTTCTACTGTGACGCTGTTATACAACTGTGACGCAGCACCAAATTCACAGAATTTGTTTGGTAGAGTTGACTGCGGTGATGGTAAATATGTTGTGTACACAGTTGTTTATGCTGCTTCGGGCATATGTACTCCGAGTGCTATTGTTGTGATTCCGATTTTGGGAACCCTTGCTGCACAACTTGTATCTGGAAATGGTTTAAAAGATGCATTAAAAGACGGTTTTGATTTGAAGTGGACTGGAAATTATGGACAGTGTCAAGGGTGCATTGGTTCTGGTGGTGTGTGCGGGAATGATGGAGGAAGTGAATTCAGATGTTTCTGCAAAGACGGACCTCATACAACTTCATGCAGTTCCGAAAAGGCCTATTTGTCAGGTGCAAAACGGAACCGGAGGCCTATTGTGATAGGAGCATTAGTTGCTGGATTGGGAGTAACTGTGTTCTTCATTATTATGCTAAGATGTCACTTTAAAAGGGGTATAGCTAGTAACCAAATGAGTATTTTCACAGAAAGAAGAAAAGTTGTTGACCACAATGTAGAGGTTTTCATTCAAAGTTATAATTTATCGATGCCAAGAAGATATACTTATAGAGAAGTAAAAAGGATCACAAACTCGTTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTATCTGATGGTCGTCAAGTGGCAGTGAAAGTACTAAACAAGTCAAAGGGAAATGGAGATGAATTCATAAATGAAGTTGGTAGCATTAGTAGAACATCACACATGAACATTGTATCACTTTTAGGCTTTTGTTATGAGACAAACAAAAGAGCACTAATATATGAATTCATGCCCAAAGGATCGTTGGATAAGTTAATCTACAAAAATGGATCTCCTGATGCAATTTGTGATTTTGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCTAGAGGATTAGAGTACTTGCATCAAGGATGTAGTTCAAGAATTCTGCATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAAGATTTTTGTCCTAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAAGAAGGATAGTATTGTGTCAATACAAGGGATCAGAGGTACCGCAGGATATATGGCGCCAGAAGTATATAGTAGAACATTTGGCGGAGTTTCCTACAAATCTGATGTATACAGTTATGGCATGTTGATGATTGAAATGATCGGAGGAAGAAAAAACTATGACACCGGAGGATCATGTACTTCTGAAAAGTACTTTCCAGATTGGATTTATAAGGATCTCGAGCAAGATAATACTCTTTTAAATTCTCTGACAAACTCAGAGGAAAAAAATGATATGGCTAGAAAGATTACTTTGGTGAGTTTGTGGTGCATTCAAACAAATCCATCAGACAGGCCACCAATGAATAAAGTAATAGATATGCTACTAGGACCAGTTTCCTCCATTTCAATTGCTCCAAAACCTGTTTTGTCTCCTCCTGAAATGCCACCACTACAAGTGGCAGATATGTCTTCATCCGATTTGCATGACACAAATTCAATTCCAGTTTCAAAATAA 1998 0.3754 MNQSYYHHSSSIIILVFYLTLLMISIINIPTCLCQDNTQYTNCSHAFNCESKIRNLKYPFWGGNRKQYCGSVAADPNTELTCEQSVPKITINFAKYRILDWDNTTQKLTVARDDYSRGDVCAVNNNYKNSSFDNTLFQRYNGDVSTVTLLYNCDAAPNSQNLFGRVDCGDGKYVVYTVVYAASGICTPSAIVVIPILGTLAAQLVSGNGLKDALKDGFDLKWTGNYGQCQGCIGSGGVCGNDGGSEFRCFCKDGPHTTSCSSEKAYLSGAKRNRRPIVIGALVAGLGVTVFFIIMLRCHFKRGIASNQMSIFTERRKVVDHNVEVFIQSYNLSMPRRYTYREVKRITNSFRDKLGQGGYGVVYKASLSDGRQVAVKVLNKSKGNGDEFINEVGSISRTSHMNIVSLLGFCYETNKRALIYEFMPKGSLDKLIYKNGSPDAICDFDWNTLFQIAIGIARGLEYLHQGCSSRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKDSIVSIQGIRGTAGYMAPEVYSRTFGGVSYKSDVYSYGMLMIEMIGGRKNYDTGGSCTSEKYFPDWIYKDLEQDNTLLNSLTNSEEKNDMARKITLVSLWCIQTNPSDRPPMNKVIDMLLGPVSSISIAPKPVLSPPEMPPLQVADMSSSDLHDTNSIPVSK 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02172 665 Gene3D Phosphorylase Kinase; domain 1 321 422 - -
Trre13g02172 665 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02172 665 SMART serkin_6 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02172 665 MobiDBLite consensus disorder prediction 651 665 - -
Trre13g02172 665 ProSiteProfiles Protein kinase domain profile. 348 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02172 665 Pfam Wall-associated receptor kinase C-terminal 190 254 IPR032872 -
Trre13g02172 665 FunFam PR5-like receptor kinase 423 633 - -
Trre13g02172 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre13g02172 665 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre13g02172 665 Gene3D Transferase(Phosphotransferase) domain 1 423 628 - -
Trre13g02172 665 MobiDBLite consensus disorder prediction 634 665 - -
Trre13g02172 665 PANTHER RUST RESISTANCE KINASE LR10-RELATED 320 642 IPR045874 GO:0004672
Trre13g02172 665 FunFam Suppressor of npr1-1 constitutive 4 320 422 - -
Trre13g02172 665 SUPERFAMILY Protein kinase-like (PK-like) 324 622 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02172 Trre-Chr13 18936973 18940093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02172 18 655 Receptor kinase-like Gene Family AT1G66910 37.910 3.72e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre13g02172 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02172 - - mtr:11438961 932.554