Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02164 ATGTTGTCCTTGTCCCTCTCTTCTCCCACCACCACTACCATCATCATCATCTTCCCAATCTTCATCTTCTCTCTTCATCGTACAACATCCTTACCCTCGGATGCATCACTCTCTATCTGCAACAACACTACCTTTAACTGTGGCACCATCACCAACCTTTCCTACCCTTTCACTGGCGGTGACCGTCCTTCCTTCTGTGGGCCACCACAGTTTCATCTAAACTGCCAAAACAATGTTCCAGAGTTGAATATTTCCTCGGTGAGTTACCGAGTTCTTCAAATAAACTCAGCAACTCGTTCTCTCACCTTAGCAAGATTAGACCTTTGGAACGAAACATGTACTAATCATTATATTAACACATCTTTTGATGGAACTATCTTTAGCTACGGTTTGGGAAACCGTAACCTTACTTTGTTTTATAGGTGCAAAACCACTTCAGTATTCACTGAAAAGCCGCATAATTTATTTTACTGCAATAGTAATGGAGATAAGAACAATTCATATTCTTTGATTGGTCCATTTCCTTTAGACCCAGTTCTTAAGTTTGTTGAATGTGATGAAGGTGTTGGGGTGCCAATTCTTGAAGTGCAAGCTAATAGGTTTGCAGGAAATCGTTCTTTGCTTAGAGAGGTTTTGATGAAAGGGTTTAATGTTAATTATAGCAATCCTTTTGATGATGAATGTTTTGAGTGTATTCGTTCTGGTGGTCAACAATGTGGGTTTGATTATGATAACAATGAACCTATTTGTATTTGTGGTAATGTGTTGTGTCCATCTTCAGGTAAAAGCTCTAGCACTGGCATTATAATAGGCGTAGTTGGAGGAGTTGTAGTCCTTATTTTCATTATTGGTGCATGCTTTGTCGTTCGGCGAAGGAAGAAAAGTGCTGAGAGATCAAGAAGCATTGAACCCTTCATGCCTCCTTCAAGCAGTGGCACTGGCACCGGCACTCTAACCTCCACTACTAATTCCTCCCAGAGTATTCCTTCTTATCCATCTTCTAAATCCGGAAGAGTGCCGCAAAAGAGTTTCTACTTTGGTGTCCAGGTATTTACCTATGAAGAACTAGAAGAAGCTACTGACAATTTCCACACTTCTAAAGAAATTGGAGAGGGAGGTTTTGGTACTGTTTACAAAGGTGAACTCAAAGACGGACGTGTGGTCGCGGTGAAACGCCATTACGAAAGCAACTTTAAACGTGTGGAGCAATTCATGAATGAAGTTGAGATTCTATCACACTTAAGGCATAAGAACTTGGTGTCACTCTTTGGATGTACATCTAGATCTAGCAGAGAGCTTCTCCTTGTTTATGAATACATACCGAACGGAACAGTGGCTGATCATCTTCACGGGAAACGGTCGAGCTCGGCTATGGTTACTTGGCCTGTAAGATTGAACATTGCACTAGAAACAGCTGAGGCATTAGCCTACCTCCATAAAAAAGATGTCATACACCGCGATGTGAAATCCAACAACATTCTCCTAGATGAAAAGTTTCATGTTAAGGTTGCTGATTTCGGTCTCTCAAGGCTGTTTCCGACCGATGTAACACACGTATCAACCGCGCCACAAGGAACCCCTGGTTATGTTGATCCTGAGTATTATCAGTGTTACCAACTCACCGACAAGAGCGATGTTTATAGCTTCGGCGTGCTCTTAGTCGAGCTTATATCATCATTACAAGCTGTGGATATTACCAGGCATCGCAACGACGTGAACTTAGCAAACATGGCTGTCAATAAAATTCAGGGCCAAGAATTGCATGAGTTGGTTGATCCTGAACTTGGATACGAAAAAGACAATTCTGTGAGAAACATGACAACAGCAGTAGCTGAATTAGCATTTAGGTGTTTACAGCAACAAAAAGACATGAGACCTTCAATGGATGAAGTGGTGGAGATTTTAAAAGCAATCAAGAGTGATGAACTTGAAACACATGAATCAAAAGTATTAGATGTCGTTGTTAGAACAGATGAACTTGTACTTCTGAAGAAGGGTCCTTATCCAACTTCACCAGATTCTGTTGCGGACAAATGGACGAGGGGGATGCTAAGATGA 2058 0.414 MLSLSLSSPTTTTIIIIFPIFIFSLHRTTSLPSDASLSICNNTTFNCGTITNLSYPFTGGDRPSFCGPPQFHLNCQNNVPELNISSVSYRVLQINSATRSLTLARLDLWNETCTNHYINTSFDGTIFSYGLGNRNLTLFYRCKTTSVFTEKPHNLFYCNSNGDKNNSYSLIGPFPLDPVLKFVECDEGVGVPILEVQANRFAGNRSLLREVLMKGFNVNYSNPFDDECFECIRSGGQQCGFDYDNNEPICICGNVLCPSSGKSSSTGIIIGVVGGVVVLIFIIGACFVVRRRKKSAERSRSIEPFMPPSSSGTGTGTLTSTTNSSQSIPSYPSSKSGRVPQKSFYFGVQVFTYEELEEATDNFHTSKEIGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVEQFMNEVEILSHLRHKNLVSLFGCTSRSSRELLLVYEYIPNGTVADHLHGKRSSSAMVTWPVRLNIALETAEALAYLHKKDVIHRDVKSNNILLDEKFHVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVLLVELISSLQAVDITRHRNDVNLANMAVNKIQGQELHELVDPELGYEKDNSVRNMTTAVAELAFRCLQQQKDMRPSMDEVVEILKAIKSDELETHESKVLDVVVRTDELVLLKKGPYPTSPDSVADKWTRGMLR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02164 685 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 680 IPR044652 GO:0004672
Trre13g02164 685 MobiDBLite consensus disorder prediction 298 338 - -
Trre13g02164 685 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Trre13g02164 685 SMART serkin_6 363 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02164 685 Gene3D Phosphorylase Kinase; domain 1 338 439 - -
Trre13g02164 685 CDD STKc_IRAK 369 638 - -
Trre13g02164 685 Gene3D Transferase(Phosphotransferase) domain 1 440 652 - -
Trre13g02164 685 Pfam Protein tyrosine and serine/threonine kinase 364 635 IPR001245 GO:0004672|GO:0006468
Trre13g02164 685 MobiDBLite consensus disorder prediction 304 338 - -
Trre13g02164 685 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Trre13g02164 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Trre13g02164 685 Pfam Wall-associated receptor kinase C-terminal 180 253 IPR032872 -
Trre13g02164 685 ProSiteProfiles Protein kinase domain profile. 363 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02164 685 SUPERFAMILY Protein kinase-like (PK-like) 343 641 IPR011009 -
Trre13g02164 685 FunFam receptor-like serine/threonine-protein kinase NCRK 339 439 - -
Trre13g02164 685 FunFam Wall-associated receptor kinase-like 20 440 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02164 Trre-Chr13 18846063 18849061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02164 45 680 Receptor kinase-like Gene Family AT1G25390 43.011 1.31e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre13g02164 PK_Tyr_Ser-Thr 8.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02164 - - cam:101490779 1075.85