Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02153 ATGGTTGTCGTGCGCTTTCGGGTTTCATCGCAATCCATCTCTGACTCCGCCGTTTGCTCATTGCATTACAAGATGGAATCACAGATTAAGCATGCTCTTGTTGTCAAAGTTATGGGACGAACTGGATCTCGAGGACAAGTCACTCAGGTTAGAGTACAGATTTTGGAGGATCAGAATCGTTTCATCATGAGGAATGTGAAAGGACCTGTTAGAGAAGGAGATAGGCTCACCCTACTTGAGTCCGAGAGAGAAGCAAGACGTCTCCGATAG 270 0.463 MVVVRFRVSSQSISDSAVCSLHYKMESQIKHALVVKVMGRTGSRGQVTQVRVQILEDQNRFIMRNVKGPVREGDRLTLLESEREARRLR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02153 89 Pfam Ribosomal protein S28e 28 88 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre13g02153 89 PANTHER 40S RIBOSOMAL PROTEIN S28 25 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre13g02153 89 SUPERFAMILY Nucleic acid-binding proteins 25 89 IPR012340 -
Trre13g02153 89 Gene3D - 23 89 IPR012340 -
Trre13g02153 89 FunFam 40S ribosomal protein S28e 23 89 - -
Trre13g02153 89 CDD S1_S28E 30 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre13g02153 89 Hamap 30S ribosomal protein S28e [rps28e]. 25 89 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre13g02153 89 ProSitePatterns Ribosomal protein S28e signature. 80 88 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02153 Trre-Chr13 18745348 18747161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02153 25 89 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 86.154 1.02e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02153 K02979 - twl:119995057 96.2857