LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g02152	ATGGTGCCTGATCTGAATCAGTTGCTTAACTTAGTGGATCGAATGAAACATGTTGGCGATGCGGTCAATGTGTCTATAAGTAAGTATGGGGATTTGAGGGTGCAGGTTTCAACTACGTTGATCAGCCTTGGAGCTGAGTTTCGAAAGCTGTTGGTGATTGGAGAGCAAGCAAATGCTCCAGCTGAGGATCAAAATCTCAGTGCTCAGACGCGGTCCTCAAGGTCTATCATTGCAGGCTTCCTGTACTTGACCCTGAATGCTTCAGAAACCACAACCTTTGCACACTATGTATGTCAATTAGGGTTTCAGACATTTCTTCACGCCGTTTGCGCATTGCATTACAAGATGGAATCACAGATTAAGCATGCCCTTGTTGTGAAAGTTATGGGTCGGACTGGATCTCGAGGACAGGTGACTCAGGTTAGAGTTAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAAGGACCAGTTAGGGAGGGAGATGTTCTCACCCTACTCGAGTCCGAGAGAGAAGCAAGAAGACTCCGATAG	543	0.4586	MVPDLNQLLNLVDRMKHVGDAVNVSISKYGDLRVQVSTTLISLGAEFRKLLVIGEQANAPAEDQNLSAQTRSSRSIIAGFLYLTLNASETTTFAHYVCQLGFQTFLHAVCALHYKMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARRLR	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g02152	180	Pfam	Ribosomal protein S28e	119	179	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Trre13g02152	180	CDD	S1_S28E	121	180	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Trre13g02152	180	FunFam	40S ribosomal protein S28	114	180	-	-
	Trre13g02152	180	Hamap	30S ribosomal protein S28e [rps28e].	116	180	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Trre13g02152	180	PANTHER	40S RIBOSOMAL PROTEIN S28	116	180	IPR000289	GO:0003735\|GO:0005840\|GO:0006412
	Trre13g02152	180	Gene3D	-	1	116	-	-
	Trre13g02152	180	Pfam	Hus1-like protein	1	74	IPR007150	GO:0000077\|GO:0030896
	Trre13g02152	180	Gene3D	-	117	180	IPR012340	-
	Trre13g02152	180	ProSitePatterns	Ribosomal protein S28e signature.	171	179	IPR028626	-
	Trre13g02152	180	SUPERFAMILY	Nucleic acid-binding proteins	116	180	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g02152	Trre-Chr13	18699115	18707702	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g02152	116	180	Cytoplasmic Ribosomal Protein Gene Family	AT5G03850	87.692	1.56e-34	114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g02152	K10903		-	gmx:100790963	129.028