Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02135 ATGGATTTTAACAATAACTTGGTTCCACTAGATTTTCCTTCACCTCCTCATTTGAAAGAAGCTATGCAAAACAAAGAGGTACAAGAAAAAAACCTTCATTCTTTTTGGGAGAAGCAGATGCTCAACTTGGAACTTGATAAAGAATTTAAAAGTCAATTGGCTATAACTCGAATCAGAAAGACCATGAAAGATGATGCAGATATGGTAAGTGCTGAATCTCAATTGTTGATGGCAAAAGCATGCGAAGTTTTGATTCAAGAACTCGCATATCGTGCTTGGTTGAATACTGAAGAGAGAAATAGAGTTACTGTGAAGCCTATTGATGTCGCAAAAGCCATTATGGAAACTGATCCCTTTGATGATTTTTTCATGGGTGTTGTTACTCAATATTGTGCCTCTGGTGTCAAGGTAGAGAATGTTGAAAATCTTACGGTTGCAAGCCATGAGGAAAATAAGACTGTGCAGCCTGCTGATATCCCCAATAAGGCCATTATTGAAAATGATCAAATGGAAACAGACCAAGAGTTTGTCCAACCCTTCATGATGCAACCATCATATATTCCTTCAGATCAATTACCATTCAATTATCAACCAAATTGA 600 0.37 MDFNNNLVPLDFPSPPHLKEAMQNKEVQEKNLHSFWEKQMLNLELDKEFKSQLAITRIRKTMKDDADMVSAESQLLMAKACEVLIQELAYRAWLNTEERNRVTVKPIDVAKAIMETDPFDDFFMGVVTQYCASGVKVENVENLTVASHEENKTVQPADIPNKAIIENDQMETDQEFVQPFMMQPSYIPSDQLPFNYQPN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02135 199 Pfam Core histone H2A/H2B/H3/H4 52 113 IPR007125 GO:0003677
Trre13g02135 199 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 128 - -
Trre13g02135 199 SUPERFAMILY Histone-fold 29 120 IPR009072 GO:0046982
Trre13g02135 199 Gene3D Histone, subunit A 17 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02135 Trre-Chr13 18596676 18600891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02135 32 127 CCAAT-HAP5 Transcription Factor Family AT1G56170 45.455 2.85e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g02135 CBFD_NFYB_HMF 5.7e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02135 - K08066 tpra:123888203 215.312