Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02132 ATGCGTAAACCCGCCGATAACCGGTTGAAGCTCGAGATAGATGGAACCGGTACAACGTATTGGGAGAAAAATAAGAAGAATCGGCCGAGGAGGCCTCCGAGTGCTTTCCTTCTTTTCATTGAAGTCCAACTACTTGATACAACACTGGAAGGATGTCAGAGGTTCAGGAAGGAGGGAACTTATTCCCAGACATTTTTTGTCACTGCGTGTTCAAAAATTGCTGGTGCAGAATGGAAATCAATGTCTAATGCTGAGAAGGCTCCTTACATGACTAAGGCCAAACAAGAGAGAGCTGTGTATGAAAAGTTTATGCAAGCCTACAATATTGAATTGAGCTTGGTATTGAGGCGAGGGACTTTGACAAGATCATCGACACCAATAACGATCAGTCGAAATTTCTCCTATCATTGCCCTTTGGCAGCACACATGGGGCTTCCAAAGGTTTTGCTGCATGGTGGAAGAAGTTTTATGCCCACCTACCATTTGGATTTGACCAACTGTTGGTTAGGATTGATGCATCTTTTATGCAGCTTGCTGGTGACCAATGTATGTACTGGTTCTTTTCCTACATCAAAGACTAAGAAGGCATCAAAGACTAGGAAGGTGTTGGAAATCCCTTCCTCCCCCTCAACTTCCTCTGCAGATGAGTCTTTGTCGTCGGCTGAAATCCAAGGGGTCCAGTCGAAGCCTTGCCATCCACAAGCGACTGCTACTTCGACTCAATCTTTTGACTCGGGACAGGTGGTGAAAATACCTTCCTCTGAAGATGAGTCAGCTTCCTCTAAAGATGAGTCAACTTCCTCCGAAGGTGGGTCAACTTCCTCTGAAGATGGGTCAACTTCCTCTAAAGATGAGTCTTTGTTGTCGGCTGAAGTTCAAGCGGTCCAGTCGAAGCCTTTCGGTCCACAGGCGACTGATACTCTGACTCAATCTTTTGAATCGGGTCAGAAAGTTCTGTCGGCAATGGAAGTTAAACCTTTGCCGACTTCTGATCCTGTCGTGTCGGTCTCTGACACTGTGATGGCCGACCCACAAACAAATGTCTCTCGATCTGTAGATGTAGTCATGAAGGACCAAGCAGTCATTCCTGAAGAAATGGTCACCATGGGAGGGCCTTTCCAGAAAGTTGACTATCATCAAGATCCAACGGAAGACCTAGTTCATCAGGTTAAGCAAGAGTGTACTGGTGACACTGACCCCGCAGATGACTTGCTTTCTTTGCTGACTGACTCAAGTCCTGCAGCTTCTGCGTTTTCTGGTCCATCCTCCACTACTGCTTGGCTTAATTCTAGTGACTCCGAAGCCATGGAACTTTTCAAAGAATTGAAGAGACTAGTGTCGAAGCCTTTTGACGTTGCTTCTGCTGACACCTCTGCATTCGACCATATGAGGAGACTAGTTGAAGAACTCAAGCCTCTCAAGCAACGACTGCCTCTCTCAAGCCAAAGTACTCTTGAGCAGGTCAACAACTTTCTATCCCTTCATGCATCCAAGAATGCTTTCTTAACCGCTACCCTTCCTGTTTACGAGCAAGCAGTAAATTCCAAAGAGGACTTGGTGAAGAAGATTCTTCCTCTCAAAGAACAAAAAGACGAGATTGCAGTCAACAGAAAGCAGCAAGAGGCAGCAAAGGTCAAGGCTAAAGAGAAAGTTGACCAACTCAAGAAGCAATTGGCCTTAGCCGAGGCAGAACTAGCTGAAGCCAACACTGGTATTGCTGTCTTAATCAATTTGGAGAAGAAGCGTGTCGACAGCATCAATGCCCTTCGTGGTGAGGTGAATCAGACAGCAGAAATTCTAAGGAATCTTCAGTCCGACTACGAGTTAGCAGTGTGGACTAAGAAAGAACTTGAGGACCTGTGGTTGAAGATTACCTAA 1878 0.459 MRKPADNRLKLEIDGTGTTYWEKNKKNRPRRPPSAFLLFIEVQLLDTTLEGCQRFRKEGTYSQTFFVTACSKIAGAEWKSMSNAEKAPYMTKAKQERAVYEKFMQAYNIELSLVLRRGTLTRSSTPITISRNFSYHCPLAAHMGLPKVLLHGGRSFMPTYHLDLTNCWLGLMHLLCSLLVTNVCTGSFPTSKTKKASKTRKVLEIPSSPSTSSADESLSSAEIQGVQSKPCHPQATATSTQSFDSGQVVKIPSSEDESASSKDESTSSEGGSTSSEDGSTSSKDESLLSAEVQAVQSKPFGPQATDTLTQSFESGQKVLSAMEVKPLPTSDPVVSVSDTVMADPQTNVSRSVDVVMKDQAVIPEEMVTMGGPFQKVDYHQDPTEDLVHQVKQECTGDTDPADDLLSLLTDSSPAASAFSGPSSTTAWLNSSDSEAMELFKELKRLVSKPFDVASADTSAFDHMRRLVEELKPLKQRLPLSSQSTLEQVNNFLSLHASKNAFLTATLPVYEQAVNSKEDLVKKILPLKEQKDEIAVNRKQQEAAKVKAKEKVDQLKKQLALAEAELAEANTGIAVLINLEKKRVDSINALRGEVNQTAEILRNLQSDYELAVWTKKELEDLWLKIT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02132 625 MobiDBLite consensus disorder prediction 190 289 - -
Trre13g02132 625 Gene3D High mobility group box domain 19 118 IPR036910 -
Trre13g02132 625 MobiDBLite consensus disorder prediction 264 289 - -
Trre13g02132 625 Coils Coil 586 606 - -
Trre13g02132 625 Coils Coil 537 571 - -
Trre13g02132 625 Pfam HMG (high mobility group) box 29 108 IPR009071 -
Trre13g02132 625 SUPERFAMILY HMG-box 22 110 IPR036910 -
Trre13g02132 625 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 29 108 IPR009071 -
Trre13g02132 625 MobiDBLite consensus disorder prediction 203 255 - -
Trre13g02132 625 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 22 111 IPR031061 -
Trre13g02132 625 SMART hmgende2 28 109 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02132 Trre-Chr13 18560320 18567429 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre13g02132 HMG_box 6.1e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02132 K25507 - psat:127126822 337.806