Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02129 ATGGCTTCGAAATCCAAATCCCAAACCCTAGACTTAAACTCCACCCAACTATTCACCACCGCTCTTCAATCCCTCAACCTCCCTAAACCCTCTCTCCCACTCCCACCACTTCCTTCTTCCTCCATCCCTCACTCCAATCTCATCCCCAACACTCGCTTCCTCATCGACGCTTTTCGCCATTCCGGCCACTTCTCCGTCTCCTATTTCCTCTCCCATTTCCACTCCGATCACTACTCCGGTCTCACCTCCTCCTGGTCTAACGGCATCATCTTCTGTTCCCCAATCACCGCCCACCTCCTCATCAATATCCTCAACATCCCTTCCTCATTCATCTACCCTCTCAATCTTCACCAACCTGTTACAATTGATGGATCTGTTGTCACTCTCATTGACGCCAATCACTGTCCTGGCGCGGTTCAGTTCCTTTTTCAGGTTCCTTTTATGGATCAATCCTTGAGGTATGTTCATACTGGCGATTTTCGGTTTTCGACTGAAATGTTGTTGGATTCTGCACTTGGTTGTTTTATTGGTGCTGATGCTGTGTTTTTGGATACTACTTATTGTCATCCTAAATTTGTTTTTCCTACGCAAGATGAGTCGGTTAATTATGTTGTTGATGTTGTAAATCAGTGTGATGGTGATGATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGATTGCTAAGAGGTTTGGGAAGAAAGTGTATGTTGATGCTAGGAAAATGGAGGTTTTGAGGGCGCTCGGGTATGGAGAGAGTGGTCAGTTTACTGAGGATTGTTTAGAGACGAATATTCATGTTGTTGGATGGAATGTTTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAAGATGAAGGAGATTATGATTGAGAGAGGGTATTCTAAGGTTGTGGGTTTTGTGCCTACTGGTTGGACTTATGAAGTGAAGCGTGATAAGTTTGCCGTTAGGTCCAAGGATTCATGTCGGATTCATCTTGTGCCATACAGCGAGCATTCGAACTATGATGAGCTTAGGGAATATGTGAAGTTTTTGAAACCGAAGAGGGTTATTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAGCATGTTGACAAAATGAGGAAGTATTTTGCTGGGTTGGTTGATGAGGCGGCCAACAAGCAAGAGTTTTTAAGGGGTTTTAAGCGGCGTGATTCCGGTGTTGTGGGTCCTGAATCCGGGAAGGATGTTTGTGATGATCTGGAACTAGGGAAGAGCATCGAGAAAGAAATGAAGCCGTCTGATGTGGGAGAGGATAAAAATTTTAATCCGGATGTTTCTGTAAGTCTGTCATCTTGTATGGGAGAAACTTGTGTAGAAGATCCTGCATTGCTAAATGATGAAGAAAAAGATAAAGTCATTGAAGAATTGAGTTGTTGTTTGCCCACGTGGGTCACCCGAAGCCAGATGTTAGATCTGATCAGCATCTCTGGGAGCAATATCGTTGAAGCTGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCACGAGCAAGTAAATTCGGGCCAAATTTCAGTTCCAACACCCAGGTGTTGCTCATCCAATGATGCCAGTACCAGTCCCATTTCAAAATCAAACCTCAACGATACAAACAACACTTTTAAAAAATGCGACATTTTTCCAAGTCAAGACTCTAAAATGGTTAACCTAAGGCATCCATTACCAAATCAGATTTCCCCTTCCAAAAGAAAGAGGAGTAGTGAAACTAAGTCAAACAAGAAAGTCAAAGTCAAGGCAAAATCAGAATCAAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTCAGCAAAGCAATGCCTGTGATGCCTGGTGATACCCAATCTGATCAACATGGATCAAAGCCCGATGAAAGCCCCAAAGTTGAAGAATTGTTGCCAACTGCTGCTGGAAGCTTGTATAAGCAAGAGATTGATCAGTTTATGCAAATTATAAATGGGGATGAGTCATTAAAGAAGCAAGTAATTACTATAATTGAGAACACAAAAGGAGATATCAATAAGGCGTTGGATATATATTATTCTAATACTTGCAATCTTGGTGGGAAGGAAATAGCAGTTCAAGGGGAGTGCAAAATTGACAGACCTTTAGAGAATAAATGTGTGTCACAAGAGTTAAGAGTTATACCCGATATTTCTATGCATAGAATGTTAAAAGATAATGTAGATGCAACTCATGTATCTCTACCATCTGAGAAATACAATCCTAAGAAACATGCGTGTTGGAGAGATGGAGAGCCTGCACCATATTTACATCTTGCACGGACCTTCAACCTGCTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATACTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGACGTGCTTCCTGCAGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTAAAGCACTCGAAGAGGCATGCGGAACAAATCGATTGAAAATAAGGGAGATGTATAATAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGCCAAACACAGAGATTGCTCGCACCACCTACACCACTTCTAATTAAGGATATTTACTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATCAAATTTCTTGTTCGGACCTTGGTCAGGAACTTGAGGATTGGGGCAATGCTCAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGCCCTACTGTGGGCCAAGAAGGAAAGGCAGAAAATTTGAAGGCGCCACTTCAGGTCCTTTCTGTGGCAGTTGTCGAAGCATATAACATACTTCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCGAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATCACCAATGGAATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTGGTTGATGGATCAGTTCGTGTTTTTTCAAGAAACGGAGAAGAATCAACTTCGAGATTCCCTGATCTGATTGACATGATAAAGGAATCTTGCAAGCCTGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGCTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAGGCAAAGATACTTTAATTACTAAAGAGAGCATAAAGGTGGGCATTTGTGTCTTTGTCTTTGATATCATGTTTGCAAATGGAGAACAGTTACTGGGTTTTCCTCTCCGCCAAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGGCCTGGGTATTTTGAATATGCAAAAGAAACAACTATCGAAGCAGATGATGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATACTTTCCTTGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATATTGATTCTGGGTATTCCCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTAG 3783 0.4113 MASKSKSQTLDLNSTQLFTTALQSLNLPKPSLPLPPLPSSSIPHSNLIPNTRFLIDAFRHSGHFSVSYFLSHFHSDHYSGLTSSWSNGIIFCSPITAHLLINILNIPSSFIYPLNLHQPVTIDGSVVTLIDANHCPGAVQFLFQVPFMDQSLRYVHTGDFRFSTEMLLDSALGCFIGADAVFLDTTYCHPKFVFPTQDESVNYVVDVVNQCDGDDVLFLVATYVVGKEKILLEIAKRFGKKVYVDARKMEVLRALGYGESGQFTEDCLETNIHVVGWNVLGETWPYFRPNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCRIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGLDVEKSDSKHVDKMRKYFAGLVDEAANKQEFLRGFKRRDSGVVGPESGKDVCDDLELGKSIEKEMKPSDVGEDKNFNPDVSVSLSSCMGETCVEDPALLNDEEKDKVIEELSCCLPTWVTRSQMLDLISISGSNIVEAVSNFFERETEFHEQVNSGQISVPTPRCCSSNDASTSPISKSNLNDTNNTFKKCDIFPSQDSKMVNLRHPLPNQISPSKRKRSSETKSNKKVKVKAKSESSGSKQATITKFFSKAMPVMPGDTQSDQHGSKPDESPKVEELLPTAAGSLYKQEIDQFMQIINGDESLKKQVITIIENTKGDINKALDIYYSNTCNLGGKEIAVQGECKIDRPLENKCVSQELRVIPDISMHRMLKDNVDATHVSLPSEKYNPKKHACWRDGEPAPYLHLARTFNLLEDEKGKIKATSILCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTKALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQTGNGSTLRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVGQEGKAENLKAPLQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGEESTSRFPDLIDMIKESCKPVASTFIIDAEVVAIDRKNGYRIMSFQELSSRGRGGKDTLITKESIKVGICVFVFDIMFANGEQLLGFPLRQRRKYLKDLFYDERPGYFEYAKETTIEADDACLTCEATLTRINTFLEDALRSSCEGIMVKSLDIDSGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGW 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02129 1260 CDD Adenylation_DNA_ligase_I_Euk 1003 1235 - -
Trre13g02129 1260 FunFam DNA ligase 1041 1172 - -
Trre13g02129 1260 Pfam DNA repair metallo-beta-lactamase 262 364 IPR011084 -
Trre13g02129 1260 Gene3D - 193 341 - -
Trre13g02129 1260 MobiDBLite consensus disorder prediction 563 603 - -
Trre13g02129 1260 Pfam ATP dependent DNA ligase domain 1012 1232 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre13g02129 1260 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1036 1044 IPR016059 GO:0003909
Trre13g02129 1260 Gene3D - 48 363 IPR036866 -
Trre13g02129 1260 CDD SNM1A-1C-like_MBL-fold 48 190 - -
Trre13g02129 1260 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 745 995 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre13g02129 1260 NCBIfam ATP-dependent DNA ligase 824 1260 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre13g02129 1260 MobiDBLite consensus disorder prediction 618 639 - -
Trre13g02129 1260 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 968 1234 - -
Trre13g02129 1260 FunFam DNA ligase 193 341 - -
Trre13g02129 1260 ProSiteProfiles ATP-dependent DNA ligase family profile. 1123 1260 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre13g02129 1260 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 364 IPR036866 -
Trre13g02129 1260 Gene3D DNA ligase/mRNA capping enzyme 1041 1172 - -
Trre13g02129 1260 Gene3D - 1023 1236 - -
Trre13g02129 1260 Gene3D - 743 1014 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre13g02129 1260 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 274 1260 - -
Trre13g02129 1260 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre13g02129 1260 Gene3D - 1237 1260 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02129 Trre-Chr13 18536627 18552910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02129 751 1259 Core DNA Replication Machinery Family AT1G08130 40.234 6.87e-125 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02129 - - gmx:100807673 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02129 13 18536627 18552910 Trre13g02129 13 18536627 18552910 ECH