Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02128 ATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCGGACTCTTTTTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATGTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCGGACATGTGGTTTTCTCCACAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGCAGTGTGTCAGACAGAAACCCAGAAGAATGTAGCACAGCTACTGATATAGTTGAAATGTTTCAATTGCAGACTCGGAAGATGGATGTCACAACCGAAGGTTGA 393 0.4122 MACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKMLSKKPPYYQTGETPDMWFSPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTATDIVEMFQLQTRKMDVTTEG 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02128 130 Gene3D - 1 129 IPR012340 -
Trre13g02128 130 Pfam ATP dependent DNA ligase C terminal region 1 98 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre13g02128 130 FunFam DNA ligase 1 129 - -
Trre13g02128 130 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 122 - -
Trre13g02128 130 CDD OBF_DNA_ligase_I 1 118 - -
Trre13g02128 130 SUPERFAMILY Nucleic acid-binding proteins 1 120 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02128 Trre-Chr13 18534080 18535393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02128 1 120 Core DNA Replication Machinery Family AT1G49250 42.742 1.41e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02128 - - gmx:100807673 241.506