Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02122 ATGGCCTTACAGAACATTGGTGCTGGCAACAGCGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGCAGAGGCAATGGCATCAAAACGAATATTGTCAATATGGTTGATATTGCGAAAGCTTTAGCAAGGCCAGCTGCTTACACAACAAAGTATTTTGGTTGTGAACTTGGAGCACAGTCAAAATTTGATGAGAAAACTGGGACTTCTCATGTCAATGGAGCACACGACACTGCAAAACTTGCTGGTCTTCTTGAGAACTTCATTAAGAAGTATGTCCAATGTTATGGTTGTGGAAATCCTGAAACTGAGATTATAATTACCAAGAATCAAATGATCCAGATGAAATGTGCTGCTTGTGGTTTTGTGTCTGACGTGGATATGAGAGACAAGCTTACTACTTTCATCATTAAGAACCCACCAGAAACAAAGAAAGGTTCTAAAGACAAGAAGGCCTTGAGGAAAGCTGAGAAGGAAAGACTGAAGGTCGGTGAAGCAGCTGATGAGGAGCTGAAAAAACTGAAGAAAGATGCCGTGAAGAAGAAAGTAACTTCTAAGGAAGGCACCACAAAATCAAGCTCTTCAAGGAAGAAAGGAAGTGGCTCTGATGAAGATCATACTTCTCCTACTCGAAGTACAACTGATGAGAAGGACGATGCTGAAGATGAAGATGATGTACAATGGCAAACAGACACATCATTGGAGGCTGCTCGTCAACGAATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTCTCCACAACTGAACCAGAGAAGGAGAAAGCAGACACTAAGGTAAGTGATAATCCTGGTAATGGTAACTCCATGAACTACAAGACTCTGGTTGGTGAACTCAAAGCTGATTTGAAGAAAGGTGCTTCGGCCAACGAATTGGTGACCCATTGGGCATCACTTCCTGTCTCTCCACAAGATAAGATGAGTGCTCTGTACGAAGCCCTATTTGGGGACATTGAGAAAGGGTTTGCAAAAGAAGCAATCAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCTGAAGAAGAGGGTATGCCTTTGCTGTTGTTGCGTGCAATTGAGGAATTTTCTTTGAAGTCCACTTCCTCTGCACTTAAGGAGGTTGCCCTGGTTCTGAAGGCACTCTATGATGCTGATGCGTTGGAGGAAGAACACATATTGCAGTGGTATCAAGAAGGGCTGAAAAGTGATAACAAGAACTCTCAGATTTGGAAGAATGTTAAACCCTTCATTGAGTGGCTTCAGAGTGCAGAATCAGAGTCCGAGGAAGAGTAA 1314 0.4277 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQMKCAACGFVSDVDMRDKLTTFIIKNPPETKKGSKDKKALRKAEKERLKVGEAADEELKKLKKDAVKKKVTSKEGTTKSSSSRKKGSGSDEDHTSPTRSTTDEKDDAEDEDDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTTEPEKEKADTKVSDNPGNGNSMNYKTLVGELKADLKKGASANELVTHWASLPVSPQDKMSALYEALFGDIEKGFAKEAIKKKNYLAAAVAEEEGMPLLLLRAIEEFSLKSTSSALKEVALVLKALYDADALEEEHILQWYQEGLKSDNKNSQIWKNVKPFIEWLQSAESESEEE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02122 437 Gene3D - 3 104 - -
Trre13g02122 437 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Trre13g02122 437 CDD W2_eIF5 286 430 - -
Trre13g02122 437 MobiDBLite consensus disorder prediction 183 222 - -
Trre13g02122 437 SMART 542_3 345 433 IPR003307 GO:0005515
Trre13g02122 437 MobiDBLite consensus disorder prediction 145 167 - -
Trre13g02122 437 Pfam eIF4-gamma/eIF5/eIF2-epsilon 362 437 IPR003307 GO:0005515
Trre13g02122 437 MobiDBLite consensus disorder prediction 148 167 - -
Trre13g02122 437 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Trre13g02122 437 MobiDBLite consensus disorder prediction 183 233 - -
Trre13g02122 437 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Trre13g02122 437 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Trre13g02122 437 ProSiteProfiles W2 domain profile. 277 437 IPR003307 GO:0005515
Trre13g02122 437 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Trre13g02122 437 MobiDBLite consensus disorder prediction 263 284 - -
Trre13g02122 437 SUPERFAMILY ARM repeat 286 431 IPR016024 -
Trre13g02122 437 Gene3D - 281 428 - -
Trre13g02122 437 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Trre13g02122 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 436 IPR045196 GO:0003743|GO:0006413
Trre13g02122 437 Gene3D - 105 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02122 Trre-Chr13 18502792 18504105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02122 1 430 Eukaryotic Initiation Factors Gene Family AT1G36730 65.011 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02122 K03262 - gmx:100796346 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02122 13 18502792 18504105 Trre13g02122 13 18502792 18504105 ECH