Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02121 ATGAATGGGAAAATTGAGTCACATTCTCCTAATACATTGGCACAATGTCGAATATGTCATGATGAAGATGAAGACTTAAACATGGATATACCTTGTTCTTGTTGTGGCACATTGAAGTATGCACATCAAATATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAACTTAAGGGCTATACTGCTCCTCCACAAGCTCCTTTATTCCACTATGGGGGCAACTGGGAAATTCCAAGAATTGGTCTTAATAATAATCAGTTCATAACACTGTTTCCTGCTAATCATGAATTCATGGACCCTAACTTTGAATTTTCAGCACCCTCTACAAGGAGCCTCATGTTCTTCCGCATTGTTGCCATTATTTTTATTGTTCTGCTTGTTTTACGCCAGACACTTCCAATCATATTCATACTCAATGGAGTAGGAGAGTATTCCTTGACAGTGTTTATGTTGCTAGTGTGGGGAATCACTGGATTAATTGTACCAGTGTATATAATGGTAAAAGCTATTACTACTATCCAACAACTTCAATACCAGGAGCGTAATTCTCTCGTGCAATTACATGCAGAAAATGACATGGAGCAGTCTCAGTTGCGTATAATCCATATTCAGTGA 639 0.3834 MNGKIESHSPNTLAQCRICHDEDEDLNMDIPCSCCGTLKYAHQICVQRWCNEKGDTTCEICQQQLKGYTAPPQAPLFHYGGNWEIPRIGLNNNQFITLFPANHEFMDPNFEFSAPSTRSLMFFRIVAIIFIVLLVLRQTLPIIFILNGVGEYSLTVFMLLVWGITGLIVPVYIMVKAITTIQQLQYQERNSLVQLHAENDMEQSQLRIIHIQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02121 212 CDD RING_CH-C4HC3_MARCH 16 62 - -
Trre13g02121 212 SMART ringv_2 15 62 IPR011016 GO:0008270
Trre13g02121 212 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Trre13g02121 212 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Trre13g02121 212 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 187 IPR033275 -
Trre13g02121 212 SUPERFAMILY RING/U-box 13 65 - -
Trre13g02121 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Trre13g02121 212 Pfam Protein of unknown function (DUF3675) 67 178 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02121 Trre-Chr13 18499663 18501823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02121 15 63 C3H Transcription Factor Family AT2G37950 42.308 1.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02121 - - gmx:100806609 279.641