Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02117 ATGTCTTCATCGGAACCTAAATACGAAATCCCACCGGCCCCAACATACAAGACCCCACCGGCACTAGTAGCATTCACCCTCACCGTCCTCATCCTATGCTTTGTGGCTTTTAGCGTCGTGTATCTTTGCAAGTATTGTTTTGCAAGCGTTTTACATACTTGGGCCTTACAACGCACAGCCTCAGGATCCCTCGTTCGTCTCTCACCTGAGAGGTCACCTCCTAGGGGACTCGATCTTACCCTTCTAGAAAAATTTCCAACTTTCCTCTACGCCTCCGTAAAAGACCTTCGAAAGGAGAAGACTTATAGCTTAGAATGTGCCATTTGTTTGCTAGAGTTTGAAGACGATAGCATGCTTCGTCTCCTAACCATTTGTTGCCATGTTTTCCACCAAGAATGTATTGACCTATGGCTTCAATCTCACAAGACATGCCCCGTTTGTCGAACCGACCTTGATTCACCTCCCGACCAAATGTCAAAACACGGCGGGGACAACACCACCACCACCAACAACAATAATGAACAAGAGGGTATGTCATCATTACCGTGCGATGATGACATACACATTGATATTAGAGAAGAGGAAAGAGACAGTGTTGGTGAGATCACTAGAGCTCAAATACATGAAGGGGATCAACATGTGAGTACAAGCATGAGACAACAAGAAGAACAAAGATTTTCAAGGTGTCATTCAACAGGACATTCTATAGTAATGATTAGAGGTGAAGAAAAAGATGATGAAAAATATACATTGATATTACCTGAACATGTTATAAGAGGAGGACACAACTGCACAAAGAGTTGTACAAATTACAGTGAGATGACATTGACAGTGCCTACACCTTGTAGTAATTGTGGTTTTATTAAACCAGTATCTGCCTCCTCTTCACTTGCTCAAGCTCAAGAGGCTTGA 912 0.4309 MSSSEPKYEIPPAPTYKTPPALVAFTLTVLILCFVAFSVVYLCKYCFASVLHTWALQRTASGSLVRLSPERSPPRGLDLTLLEKFPTFLYASVKDLRKEKTYSLECAICLLEFEDDSMLRLLTICCHVFHQECIDLWLQSHKTCPVCRTDLDSPPDQMSKHGGDNTTTTNNNNEQEGMSSLPCDDDIHIDIREEERDSVGEITRAQIHEGDQHVSTSMRQQEEQRFSRCHSTGHSIVMIRGEEKDDEKYTLILPEHVIRGGHNCTKSCTNYSEMTLTVPTPCSNCGFIKPVSASSSLAQAQEA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02117 303 SMART ring_2 106 147 IPR001841 -
Trre13g02117 303 MobiDBLite consensus disorder prediction 152 183 - -
Trre13g02117 303 Pfam Ring finger domain 105 148 IPR001841 -
Trre13g02117 303 PANTHER RING FINGER DOMAIN-CONTAINING 15 151 - -
Trre13g02117 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Trre13g02117 303 SUPERFAMILY RING/U-box 83 156 - -
Trre13g02117 303 MobiDBLite consensus disorder prediction 159 179 - -
Trre13g02117 303 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre13g02117 303 FunFam E3 ubiquitin-protein ligase ATL6 66 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02117 Trre-Chr13 18470993 18471904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02117 20 259 Rapid Response to Elicitors AT2G35000 34.286 1.43e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02117 - - gmx:100815505 342.043