Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02096 ATGGCAGATCCTTCTTCTTCTTCTTCCATCTATGAGTTCTTCAAACAACAACAACAACAACCATCTTCATCATCAAGAGGTGCTAGAAGATCCTCTTCATCTTCAACAACAAGAACTTTTCAATGCCATTTTTGTCATAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTGAAAGAGCTGCTGCTAGAACAAGAACCATCAACCTCAACAACAACAACAACAACAACAATGGTACTGTCTCTTTCTCACCACCACCACAACAACAACAACTCATGAATGAACCAAAAACCTTAACTATGTCTCATGAACAACAATATCAAGGTGGTTTTTTTAATCATCATTATGAATACCCTTATTGGCAAAACCGTGAAATGGAACAACCACCATCTTCACAGTTTCATCATCAACAATACCATGTTCCAACAAACACTTTTCCTATGGTTCCTTTTAATGCTTCTTCTGCTTCATTTTCTGATCAACATGTTTTCTACAACAATGCTTCTACTGCTGCTGTTTCTGCTTCTCCATCTCATGAACAATTTGTTGATGCTTCTGACAATATCAATCTTGACCTCACACTTCACTTGTGA 612 0.3758 MADPSSSSSIYEFFKQQQQQPSSSSRGARRSSSSSTTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARTRTINLNNNNNNNNGTVSFSPPPQQQQLMNEPKTLTMSHEQQYQGGFFNHHYEYPYWQNREMEQPPSSQFHHQQYHVPTNTFPMVPFNASSASFSDQHVFYNNASTAAVSASPSHEQFVDASDNINLDLTLHL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02096 203 MobiDBLite consensus disorder prediction 1 37 - -
Trre13g02096 203 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Trre13g02096 203 MobiDBLite consensus disorder prediction 76 97 - -
Trre13g02096 203 Gene3D Classic Zinc Finger 14 91 - -
Trre13g02096 203 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Trre13g02096 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Trre13g02096 203 PANTHER ZINC FINGER PROTEIN JAGGED 12 202 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02096 Trre-Chr13 18297608 18298219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02096 38 92 C2H2 Transcription Factor Family AT5G14010 58.182 3.08e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g02096 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02096 - - tpra:123891679 188.734