Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02090 ATGGCTATAGATAAATATGTTGCTTATGATTTGGAAGCTGGCCCAAAGTTGCCTGTTGGATTCAGGTTTGATCCAACAGATGATATTCTTGTGAACTTTTACCTAAAGTTGAAGGTTTATAATCAACCTCTTCCACTTCATGGCATTCAAGAAGTTGATGTCTTTCAAACTGAGCCTTGGATGCTTCCATACGATAGGAATTCATTCAAAGATAGGAAATATTATTTCTTTGATATTAGGAACCGTAAGTTCCTAAACATGGATACGAGAATCGCTGGAAATGGTGAATGGAGAACAGTGGAAAAGAACAAGGAACTTGCTCTCCCAAACAATTACTTGATTGGTAGAAAGAACACCCTTGCATATTGGAGAATACAAGGAAATGAAGTTGTTAAGACACAATGGATGATGCATGAATTTCGCATCGGCACAATTTTTCATCCAATAAAGGTGACAACTTTAGGTGCCTATCGCATTTTTAAGATGAAGGTTGCAAAGGTTAAGAAGAAGGTGAACACACCAACTGTGATTGATTTTACAATGGAGGATGCAAGTTCATCCACCCCTCCTCCTTCACCATGA 582 0.3814 MAIDKYVAYDLEAGPKLPVGFRFDPTDDILVNFYLKLKVYNQPLPLHGIQEVDVFQTEPWMLPYDRNSFKDRKYYFFDIRNRKFLNMDTRIAGNGEWRTVEKNKELALPNNYLIGRKNTLAYWRIQGNEVVKTQWMMHEFRIGTIFHPIKVTTLGAYRIFKMKVAKVKKKVNTPTVIDFTMEDASSSTPPPSP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02090 193 SUPERFAMILY NAC domain 14 147 IPR036093 GO:0003677|GO:0006355
Trre13g02090 193 PANTHER NAC TRANSCRIPTION FACTOR 56 17 161 - -
Trre13g02090 193 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Trre13g02090 193 Gene3D NAC domain 26 172 IPR036093 GO:0003677|GO:0006355
Trre13g02090 193 ProSiteProfiles NAC domain profile. 17 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02090 Trre-Chr13 18258672 18259880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02090 17 153 NAC Transcription Factor Family AT3G04070 37.762 1.41e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g02090 NAM 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02090 - - cam:101501671 239.195