Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02084 ATGGGTCGTTGCCCATGTTTTGGGTCTAGAAAGAAGGGGAAAGGGAAGAGCCTTAATGATCAGGAAGAGGAAAAAAACAACCTTAAATCTGTTGAAACCCCCTCTTCTGGAAGATCTGTAGAACAGAAACCAGAAGCTATACCAACAGTGAATGCCGACAGTTCTGATAAGGCTCGGATATTTACCTTCAGAGAGCTCGCGACAGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGACAAGGTGGATTTGGAACTGTTTACAAAGGAAAGATAGATGGGATTAGTCAGGTTGTAGCTGTTAAAAGACTCGATACAACTGGTGTCCAAGGGGAGAAAGAATTTCTAGTGGAAGTTCTAATGCTCTCTCTTCTACACCATCCCAACCTTGTTAGTATGATTGGTTACTGCGCCGAAGGAGATCAACGGCTTCTTGTGTATGAATACATGCCTATGGGATCCTTAGAATCTCATCTCCATGATCTTTCACCGGATAAAGAACCGCTCGATTGGAATACGAGAATGATGATAGCGGCTGGGGCAGCAAGAGGACTAAATTATCTGCACCATGAAGCAAAGCCTACTGTTATATACAGAGATCTGAAAACATCTAATATACTATTGGATGAAGGATTCCATCCAAAGCTTTCTGATTTCGGGCTTGCCAAATTCGGTCCGACTGGAGACCAATCATATGTCGCTACTAGAGTGATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGATATATATAGTTTTGGAGTTGTGTTATTGGAGCTAATTGCCGGACGTAGAGCTTATGACGATACCCGTGAGCATGACAAGCATCTTGTTGATTGGGCACGCCCAATGTTCAGAGACAGAAGGAATTTTCCAAAATTAGTAGATCATCGTTTGCAAGGTGTGTACCCTTTATCTGGTCTAAGGATGGCCATTGAAATGGCAAGTATGTGTCTTCGAGAAGAGCCACGTTATCGGCCTGATGCAGGCGATATAGTATTAGCCCTAGATTACTTGTCATCCAAGCAATATGTTCCAAAAGGATCCGGAACAGTTAGCCCAGGATCAATGGATATCGATGACTCCCCAAAAGAGACATCTATGATTTTGCCTAAAGACTTGCTAAGAGAGAAAGCTGTTGCAGAGGCTAAACAATGGGGTGAGACATGGAGAGATAAGAGACGACAAAGTGGCCAAAATAGTCCCGAGGAAATTAGGAGGTAA 1254 0.4266 MGRCPCFGSRKKGKGKSLNDQEEEKNNLKSVETPSSGRSVEQKPEAIPTVNADSSDKARIFTFRELATATKNFRDETFIGQGGFGTVYKGKIDGISQVVAVKRLDTTGVQGEKEFLVEVLMLSLLHHPNLVSMIGYCAEGDQRLLVYEYMPMGSLESHLHDLSPDKEPLDWNTRMMIAAGAARGLNYLHHEAKPTVIYRDLKTSNILLDEGFHPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELIAGRRAYDDTREHDKHLVDWARPMFRDRRNFPKLVDHRLQGVYPLSGLRMAIEMASMCLREEPRYRPDAGDIVLALDYLSSKQYVPKGSGTVSPGSMDIDDSPKETSMILPKDLLREKAVAEAKQWGETWRDKRRQSGQNSPEEIRR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02084 417 MobiDBLite consensus disorder prediction 396 417 - -
Trre13g02084 417 FunFam probable serine/threonine-protein kinase RLCKVII 46 149 - -
Trre13g02084 417 FunFam Serine/threonine-protein kinase PBS1 150 363 - -
Trre13g02084 417 MobiDBLite consensus disorder prediction 1 51 - -
Trre13g02084 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Trre13g02084 417 Gene3D Transferase(Phosphotransferase) domain 1 150 359 - -
Trre13g02084 417 PANTHER OS07G0668900 PROTEIN 22 355 - -
Trre13g02084 417 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Trre13g02084 417 MobiDBLite consensus disorder prediction 13 29 - -
Trre13g02084 417 SMART serkin_6 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02084 417 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Trre13g02084 417 SUPERFAMILY Protein kinase-like (PK-like) 56 346 IPR011009 -
Trre13g02084 417 ProSiteProfiles Protein kinase domain profile. 73 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02084 417 CDD STKc_IRAK 79 343 - -
Trre13g02084 417 Pfam Protein kinase domain 74 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02084 Trre-Chr13 18198290 18201273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02084 58 406 Glycoside Hydrolase AT3G07070 57.703 1.35e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre13g02084 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02084 K13430 - gmx:100809298 607.06