Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02083 ATGTCGTTTCCGTGTGATTATTGCGACACAAGAAGCGCGGTGCTGTATTGCAAACCAGACTCGGCAAAACTCTGCTTAGTTTGTGACCAGCACGTGCACTCGGCGAACGCACTCGCACTGAAGCACGTGCGTTACCAGATTTGTCAAAACTGCAAAAACGACGCCGCTTCGGTTCGTTGTTTCACCGAAAATTTAGTTCAATGTCACCGTTGCGATTGGGACGCTCATGGCGGCGATTCCTCTTCCTCTTCTTCTCACTACCACCATAACCTCCGCCGTCTTGACGGACTCACCGGTTGTCCTTCCGTTCAAGAGATCGTGTCTGCTTTAGGACTTGATTTGAAGCCGAACGATGCCGTTTTTGTTGCGGAGTTTGAAGGTCCTGTTGTTCCTGTTGTTCAGAATAGGGATGAGGTTTATGAACAGGTGGTGGAAGTTGCGAAGAGAAGAAGGAATTTGGATTGGTCGGTTGAAAATGAGTTCAGATTCAATGATTGTAGTAATGAAGTTGATGATTTATTGTTGCTTCAGCAAACTCCGTTTACTTCTTTGCTTAATTTTTCATCTGAATTTGATGTCGGTGCTAAGAAAAATCATAATAATGATTATGGAAATGAAGCTGAGGTTCTTCTCTGGAATCGCAATCCAACGTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATTCAATGGTGTAGAAAATGCTTCCTTATCGATTCCAAAGTCATTGCAAGATATGCATAACATGAATTGCTCAACACTTGGTGATGATATTTTATCAAGAAATAATCAATCGGATCAGTCATCATCTAGTCATGTGAAGAAGAAAGTAGAAAGCAACAAGAAAATTAGAGATGAGTTATCATCTGAGTCCAGATTGATTGAATCTATAACATATGGTGGCGCCGACAAGGTACCAGTTATGGACCATCTTTTGAGTGGGAGTGAATATGTTAGCAACATAAATGCCAAGGTTAGTTTGGAAGAGCAAGCAAGGAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACCCGAAGGTTCGACAAGCACATTCGCTATGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGCGATTTGTTAAGGCGAGTGATACAAATGATAATCAAGAATGA 1176 0.4235 MSFPCDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRYQICQNCKNDAASVRCFTENLVQCHRCDWDAHGGDSSSSSSHYHHNLRRLDGLTGCPSVQEIVSALGLDLKPNDAVFVAEFEGPVVPVVQNRDEVYEQVVEVAKRRRNLDWSVENEFRFNDCSNEVDDLLLLQQTPFTSLLNFSSEFDVGAKKNHNNDYGNEAEVLLWNRNPTYQPPQVWDFQLQKSRDMTFNGVENASLSIPKSLQDMHNMNCSTLGDDILSRNNQSDQSSSSHVKKKVESNKKIRDELSSESRLIESITYGGADKVPVMDHLLSGSEYVSNINAKVSLEEQARNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKASDTNDNQE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02083 391 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Trre13g02083 391 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre13g02083 391 MobiDBLite consensus disorder prediction 262 277 - -
Trre13g02083 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 385 - -
Trre13g02083 391 MobiDBLite consensus disorder prediction 278 292 - -
Trre13g02083 391 MobiDBLite consensus disorder prediction 366 384 - -
Trre13g02083 391 MobiDBLite consensus disorder prediction 262 292 - -
Trre13g02083 391 MobiDBLite consensus disorder prediction 366 391 - -
Trre13g02083 391 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre13g02083 391 Pfam CCT motif 341 383 IPR010402 GO:0005515
Trre13g02083 391 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02083 Trre-Chr13 18179106 18182960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02083 5 385 C2C2-CO-like Transcription Factor Family AT2G33500 35.071 4.18e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre13g02083 CCT 2.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02083 - - aprc:113862926 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02083 13 18179106 18182960 Trre13g02083 13 18179106 18182960 ECH