Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02074 ATGGATGAGGGAGAAGGAAAGAAGAAAGTGGTGGTGAAAACCGAGGCGTGTGATTTGATGGCAGGTGTTGAAGATGAAGTTGGGTTTGTCAACGTGAAAGGAGACAATAACAACAACAACAAGAAGAAGATGATGATGATTAATGGGTCGGGTCAACGGATCCGAAATGATTATGGGTTTGTTACTGCTGCATTTGGTGCTGTTCAAAGGAAGAAAAGGATGGCTAGACAGAGAAGATCTTCATCTTCTACCATTACCATTCATCTCAAAAATCTTCCTTCTACTGCAACAACTACTACCTCCTCGCACGTGCCAATCTCTCCACTTCCTCCTCTTTTTCACTCTCTCCCTCCCGCACGTGAAATTGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAATTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCAGCAGAGGCTTTTCTTCCTGCCCTCGAGGCGAAGGAAGGAATTCTTATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACCGGAGACTTTGTTAGCACACACGGTCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAATCAAACTCACAATTATGTAATTCAAGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGGAACTAGTGATACATTAATGAATGATATCTTCATTGATGATTATGAGGTGAACAAATGTTGCTTTGATGAAGCCTATCCTGCAATGAATGATACAACAAGCATGTCATTTATATATGACACAACAATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACAAATTACTCAAGGATTGGATCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTGA 963 0.4008 MDEGEGKKKVVVKTEACDLMAGVEDEVGFVNVKGDNNNNNKKKMMMINGSGQRIRNDYGFVTAAFGAVQRKKRMARQRRSSSSTITIHLKNLPSTATTTTSSHVPISPLPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALEAKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQTHNYVIQAKKACDQDEYMEGTSDTLMNDIFIDDYEVNKCCFDEAYPAMNDTTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02074 320 CDD B3_DNA 129 231 IPR003340 GO:0003677
Trre13g02074 320 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 237 IPR044800 GO:0003700
Trre13g02074 320 SMART B3_2 131 233 IPR003340 GO:0003677
Trre13g02074 320 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Trre13g02074 320 SUPERFAMILY DNA-binding pseudobarrel domain 129 233 IPR015300 -
Trre13g02074 320 Gene3D - 127 244 IPR015300 -
Trre13g02074 320 Pfam B3 DNA binding domain 131 227 IPR003340 GO:0003677
Trre13g02074 320 MobiDBLite consensus disorder prediction 79 103 - -
Trre13g02074 320 FunFam B3 domain-containing transcription factor FUS3 127 242 - -
Trre13g02074 320 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02074 Trre-Chr13 18048951 18051900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02074 48 320 B3 DNA Binding Superfamily AT3G26790 49.840 2.13e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02074 B3 1.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02074 K09287 - gmx:100813055 396.741