Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02073 ATGATGATGGATGAGGGAGAAGGAAAGAAGAAAGTGGTGGTGAAAACCGAGGCGTGTGATTTGATGGCAGGTGTTGAAGATGAAGTTGGGTTTGTCAACGTGAAAGGAGACAATAACAACAACAACAAGAAGAAGATGATGATGATTAATGGGTCGGGTCAACGGATCCGAAATGATTATGGGTTTGTTACTGCTGCATTTGGTGCTGTTCAAAGGAAGAAAAGGATGGCTAGACAGAGAAGATCTTCATCTTCTACCATTACCATTCATCTCAAAAATCTTCCTTCTACTGCAACAACTACTACCTCCTCGCACGTGCCAATCTCTCCACTTCCTCCTCTTTTTCACTCTCTCCCTCCCGCACGTGAAATTGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAATTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCAGCAGAGGCTTTTCTTCCTGCCCTCGAGGCGAAGGAAGGAATTCTTATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACCGGAGACTTTGTTAGCACACACGGTCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAATCAAACTCACAATTATGTAATTCAAGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGGAACTAGTGATACATTAATGAATGATATCTTCATTGATGATTATGAGGTGAACAAATGTTGCTTTGATGAAGCCTATCCTGCAATGAATGATACAACAAGCATGTCATTTATATATGACACAACAATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACAAATTACTCAAGGATTGGATCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTGA 969 0.4004 MMMDEGEGKKKVVVKTEACDLMAGVEDEVGFVNVKGDNNNNNKKKMMMINGSGQRIRNDYGFVTAAFGAVQRKKRMARQRRSSSSTITIHLKNLPSTATTTTSSHVPISPLPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALEAKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQTHNYVIQAKKACDQDEYMEGTSDTLMNDIFIDDYEVNKCCFDEAYPAMNDTTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02073 322 CDD B3_DNA 131 233 IPR003340 GO:0003677
Trre13g02073 322 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Trre13g02073 322 SUPERFAMILY DNA-binding pseudobarrel domain 131 235 IPR015300 -
Trre13g02073 322 SMART B3_2 133 235 IPR003340 GO:0003677
Trre13g02073 322 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 239 IPR044800 GO:0003700
Trre13g02073 322 MobiDBLite consensus disorder prediction 81 105 - -
Trre13g02073 322 MobiDBLite consensus disorder prediction 74 105 - -
Trre13g02073 322 FunFam B3 domain-containing transcription factor FUS3 129 244 - -
Trre13g02073 322 Pfam B3 DNA binding domain 133 229 IPR003340 GO:0003677
Trre13g02073 322 Gene3D - 129 246 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02073 Trre-Chr13 18048951 18051906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02073 1 322 B3 DNA Binding Superfamily AT3G26790 46.409 7.80e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02073 B3 1.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02073 K09287 - gmx:100813055 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02073 13 18048951 18051906 Trre13g02073 13 18048951 18051906 ECH