Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02072 ATGGCAAGAGCTATAGATTTCATTAAGGATATCAATGATGAAAAGGAACTCTGGAAATTAATTGTTTGCCTGGAAGATGTTTGGAAAACCGGTATTGGACAAGGTGAACATTTGGAGTTCCTTATTCTTGACAAACAGGGAGATACTATTCAAGTTGTACTTCCATCTGATCTTTATCCGCTGTTTGAGTCTAAACTGGAAGAAGGGACCACCTACATTATGAAGAACTTTAAGGTTCAACCTAATGACCTAAAGGTGAAGTTTTGTACTCACCCTTTCACACTGGTTGCTGTTAGGGGTGATGGAGGGTCTGATATCATTCCAACGAAGGTTCCTAACATTCCATCATACAAGTTTAACTTCAAAAGTTTTGATGACATTAAAAATGGAAAATATCGTCATGATCTGTTAGTAGGGGCTGTTTATGATGTTCAACAGGATAAAAGAGGGTTTACCACAAAAAAACTTCCAACTACCTTTTCTTTGGTTGATGCATCAATGAACATACTAACTTGCTCTCTATGGGGAAAGTATCAAACTGAATTTCTGGAGAAATACAACGAACTCGCCGGAGAAGGTCCAGTAATTGTCATTCTCAAACATGCTGCTATCAGAGAACCTCAAGGTATATATGAGTTGCAAGTCACAAATGCTTGGAGTGGAACAAAGTTAATAATGGATCCAGATTTCAAGGAAGTCAAGGACTACAAAACTAGTGAGGGTAGTGGTTTACTACAACAAAACTCTCAAAGTTCTCAATACTCTGCGGGCTCTCGCTATGCATTTCGTGCCCCTGTTACTCACATCTCTCAGCTCATTACACTCCCTGAGGAGGAAATCGTCACTACGGTTGCAACTCCCCACCATGTTTGCATTTCAAAAAATGGCTGGTTTTACAAATCTTGTGCCGAATGTCCTAAGGCACTTATTACTGATACTCCTCCTTACAAGTGTAAAGTAGACTCTCATGTTACTATTGAACCTGTCATCAAGTATAGGCTTGAAGCTGAAGTTCGATTTGAGGGTCATAAAGCCAGATTCCTTTTTTGGGATCGGGAATGTACTGAGCTAATAGGGAAAACTGCAGCTGAGTTGCAGACTATTATGCTTGAGGCTGGTGAATTTGATCCCCGTGAATATCCTGTTAACCTTGACGATATCACGGGCACTGAATTGGCTTTTAAAGTCAAAATTCAGGCCAAAGGCAAACTTGCAAGTATTCCATCTCTTTTGGCCCTCATTGCTCCCATTATTGGAGAGTCTTCACAATTGATGCTCGAAGATGTACCAGAAACAAGTGATATAGCTCCTTTCCACACCCAAGACCTCTCAGCCACAGGTGAATCTGATCCCGACTTTATCAAAATGCACACCCCAGCTAAAAGATCAGGCGAAGATTCTCCAACTGATGAGCCTACTTCTGCGAAGCTCTCTTCAAACAAAATCATGTTCAGGTCTACAATCAAGAAGGAAAAAGGAACTCCTCTTACTGATTTGACTAATAGGCTATCTTCAAATTTCAAAACCACCACTGGAAACTGTAGCAGCAGCTCAGAACCCCAAGTCCATACTCAACCATCAACCTCCGTAAGTCATGTCAAATCCAAAAGGCAAACAACAAACATTCACACTCTTGGCATTAACTTATTTAGTAGATTTGGTGAACCATCACAACCCACATTCCGGGCAAACCCATCCGAATTGCTGCCTGGAAAACGAAATTTTGAAGGTGAAACTGTTAAAAATCTCAATGAAAGGATGCGATTGAATGTTGATCAACACACAGACACGTCGGATGATGAAGAAGATTTTGATAACTTTGAATTGTCATACCATTAA 1839 0.4035 MARAIDFIKDINDEKELWKLIVCLEDVWKTGIGQGEHLEFLILDKQGDTIQVVLPSDLYPLFESKLEEGTTYIMKNFKVQPNDLKVKFCTHPFTLVAVRGDGGSDIIPTKVPNIPSYKFNFKSFDDIKNGKYRHDLLVGAVYDVQQDKRGFTTKKLPTTFSLVDASMNILTCSLWGKYQTEFLEKYNELAGEGPVIVILKHAAIREPQGIYELQVTNAWSGTKLIMDPDFKEVKDYKTSEGSGLLQQNSQSSQYSAGSRYAFRAPVTHISQLITLPEEEIVTTVATPHHVCISKNGWFYKSCAECPKALITDTPPYKCKVDSHVTIEPVIKYRLEAEVRFEGHKARFLFWDRECTELIGKTAAELQTIMLEAGEFDPREYPVNLDDITGTELAFKVKIQAKGKLASIPSLLALIAPIIGESSQLMLEDVPETSDIAPFHTQDLSATGESDPDFIKMHTPAKRSGEDSPTDEPTSAKLSSNKIMFRSTIKKEKGTPLTDLTNRLSSNFKTTTGNCSSSSEPQVHTQPSTSVSHVKSKRQTTNIHTLGINLFSRFGEPSQPTFRANPSELLPGKRNFEGETVKNLNERMRLNVDQHTDTSDDEEDFDNFELSYH 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02072 612 Gene3D - 3 101 IPR012340 -
Trre13g02072 612 SUPERFAMILY Nucleic acid-binding proteins 119 242 IPR012340 -
Trre13g02072 612 CDD RPA1_DBD_B_like 137 239 - -
Trre13g02072 612 MobiDBLite consensus disorder prediction 441 480 - -
Trre13g02072 612 MobiDBLite consensus disorder prediction 454 469 - -
Trre13g02072 612 MobiDBLite consensus disorder prediction 588 612 - -
Trre13g02072 612 Gene3D - 247 404 IPR012340 -
Trre13g02072 612 SUPERFAMILY Nucleic acid-binding proteins 6 96 IPR012340 -
Trre13g02072 612 Gene3D - 113 244 IPR012340 -
Trre13g02072 612 SUPERFAMILY Nucleic acid-binding proteins 277 399 IPR012340 -
Trre13g02072 612 CDD RPA1_DBD_A_like 19 93 - -
Trre13g02072 612 PANTHER OS03G0429900 PROTEIN 14 504 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre13g02072 612 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02072 Trre-Chr13 18040560 18045036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02072 33 399 Core DNA Replication Machinery Family AT5G45400 21.772 2.02e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02072 - - tpra:123884216 280.411