Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02071 ATGGCAAGAGCTATAGATTTCATTAAGGATATCAATGATGAAAAGGAACTCTGGAAATTAATTGTTTGCCTGGAAGATGTTTGGAAAACCGGTATTGGACAAGGTGAACATTTGGAGTTCCTTATTCTTGACAAACAGGGAGATACTATTCAAGTTGTACTTCCATCTGATCTTTATCCGCTGTTTGAGTCTAAACTGGAAGAAGGGACCACCTACATTATGAAGAACTTTAAGGTTCAACCTAATGACCTAAAGGTGAAGTTTTGTACTCACCCTTTCACACTGGTTGCTGTTAGGGGTGATGGAGGGTCTGATATCATTCCAACGAAGGTTCCTAACATTCCATCATACAAGTTTAACTTCAAAAGTTTTGATGACATTAAAAATGGAAAATATCGTCATGATCTGTTAGTAGGGGCTGTTTATGATGTTCAACAGGATAAAAGAGGGTTTACCACAAAAAAACTTCCAACTACCTTTTCTTTGGTTGATGCATCAATGAACATACTAACTTGCTCTCTATGGGGAAAGTATCAAACTGAATTTCTGGAGAAATACAACGAACTCGCCGGAGAAGGTCCAGTAATTGTCATTCTCAAACATGCTGCTATCAGAGAACCTCAAGGTATATATGAGTTGCAAGTCACAAATGCTTGGAGTGGAACAAAGTTAATAATGGATCCAGATTTCAAGGAAGTCAAGGACTACAAAACTAGTTCTCAATACTCTGCGGGCTCTCGCTATGCATTTCGTGCCCCTGTTACTCACATCTCTCAGCTCATTACACTCCCTGAGGAGGAAATCGTCACTACGGTTGCAACTCCCCACCATGTTTGCATTTCAAAAAATGGCTGGTTTTACAAATCTTGTGCCGAATGTCCTAAGGCACTTATTACTGATACTCCTCCTTACAAGTGTAAAGTAGACTCTCATGTTACTATTGAACCTGTCATCAAGTATAGGCTTGAAGCTGAAGTTCGATTTGAGGGTCATAAAGCCAGATTCCTTTTTTGGGATCGGGAATGTACTGAGCTAATAGGGAAAACTGCAGCTGAGTTGCAGACTATTATGCTTGAGGCTGGTGAATTTGATCCCCGTGAATATCCTGTTAACCTTGACGATATCACGGGCACTGAATTGGCTTTTAAAATTCCATCTCTTTTGGCCCTCATTGCTCCCATTATTGGAGAGTCTTCACAATTGATGCTCGAAGATGTACCAGAAACAAGTGATATAGCTCCTTTCCACACCCAAGACCTCTCAGCCACAGGTGAATCTGATCCCGACTTTATCAAAATGCACACCCCAGCTAAAAGATCAGGCGAAGATTCTCCAACTGATGAGCCTACTTCTGCGAAGCTCTCTTCAAACAAAATCATGTTCAGAACTCCTCTTACTGATTTGACTAATAGGCTATCTTCAAATTTCAAAACCACCACTGGAAACTGTAGCAGCAGCTCAGAACCCCAAGTCCATACTCAACCATCAACCTCCGTAAGTCATGTCAAATCCAAAAGGCAAACAACAAACATTCACACTCTTGGCATTAACTTATTTAGTAGATTTGGTGAACCATCACAACCCACATTCCGGGCAAACCCATCCGAATTGCTGCCTGGAAAACGAAATTTTGAAGGTGAAACTGTTAAAAATCTCAATGAAAGGATGCGATTGAATGTTGATCAACACACAGACACGTCGGATGATGAAGAAGATTTTGATAACTTTGAATTGTCATACCATTAA 1746 0.4038 MARAIDFIKDINDEKELWKLIVCLEDVWKTGIGQGEHLEFLILDKQGDTIQVVLPSDLYPLFESKLEEGTTYIMKNFKVQPNDLKVKFCTHPFTLVAVRGDGGSDIIPTKVPNIPSYKFNFKSFDDIKNGKYRHDLLVGAVYDVQQDKRGFTTKKLPTTFSLVDASMNILTCSLWGKYQTEFLEKYNELAGEGPVIVILKHAAIREPQGIYELQVTNAWSGTKLIMDPDFKEVKDYKTSSQYSAGSRYAFRAPVTHISQLITLPEEEIVTTVATPHHVCISKNGWFYKSCAECPKALITDTPPYKCKVDSHVTIEPVIKYRLEAEVRFEGHKARFLFWDRECTELIGKTAAELQTIMLEAGEFDPREYPVNLDDITGTELAFKIPSLLALIAPIIGESSQLMLEDVPETSDIAPFHTQDLSATGESDPDFIKMHTPAKRSGEDSPTDEPTSAKLSSNKIMFRTPLTDLTNRLSSNFKTTTGNCSSSSEPQVHTQPSTSVSHVKSKRQTTNIHTLGINLFSRFGEPSQPTFRANPSELLPGKRNFEGETVKNLNERMRLNVDQHTDTSDDEEDFDNFELSYH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02071 581 MobiDBLite consensus disorder prediction 431 446 - -
Trre13g02071 581 MobiDBLite consensus disorder prediction 559 581 - -
Trre13g02071 581 CDD RPA1_DBD_B_like 137 239 - -
Trre13g02071 581 Gene3D - 117 239 IPR012340 -
Trre13g02071 581 Gene3D - 240 386 IPR012340 -
Trre13g02071 581 SUPERFAMILY Nucleic acid-binding proteins 265 384 IPR012340 -
Trre13g02071 581 SUPERFAMILY Nucleic acid-binding proteins 119 239 IPR012340 -
Trre13g02071 581 CDD RPA1_DBD_A_like 19 93 - -
Trre13g02071 581 Gene3D - 3 101 IPR012340 -
Trre13g02071 581 MobiDBLite consensus disorder prediction 479 507 - -
Trre13g02071 581 SUPERFAMILY Nucleic acid-binding proteins 6 96 IPR012340 -
Trre13g02071 581 MobiDBLite consensus disorder prediction 418 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02071 Trre-Chr13 18040560 18045036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02071 1 384 Core DNA Replication Machinery Family AT5G08020 21.546 1.44e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02071 - - tpra:123884216 266.544