Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02065 ATGTGTGGACCTTGGTTGCGCGGGGAAGACAAATTATGGGTGCAATCTCCTCAACCTCAAAAAACAGTGGCTGAGCACATCCTAAACACACCTTTCTTTGTGGAGGTGAAGGAGGATAGTCAGCTCAATGCGATAAACCGAAAGCAAACTGGAAGCTTAGCTGTTCGTGATCTTTCTAACTTGAAGGATTGGCTCGCAAGCTACGAAACATTGACTATCTACGTGGTCCCAAGGTCTTCTAAGAAGTTTTATGAGGATAATGAATATGCTGTTTATACTGTAACACTCTTCAATCGTGTGGCAGACAACTTTAGAACTAGTGCACGGGAAAAAAGGTTTCCAAATTCGTGA 351 0.4302 MCGPWLRGEDKLWVQSPQPQKTVAEHILNTPFFVEVKEDSQLNAINRKQTGSLAVRDLSNLKDWLASYETLTIYVVPRSSKKFYEDNEYAVYTVTLFNRVADNFRTSAREKRFPNS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02065 116 Gene3D - 59 115 - -
Trre13g02065 116 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 62 113 IPR004907 GO:0033180|GO:0046961|GO:1902600
Trre13g02065 116 Pfam V-ATPase subunit C 60 113 IPR004907 GO:0033180|GO:0046961|GO:1902600
Trre13g02065 116 SUPERFAMILY Vacuolar ATP synthase subunit C 39 113 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02065 Trre-Chr13 17983969 17985862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02065 40 113 Primary Pumps ATPases(2) AT1G12840 64.286 1.80e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02065 K02148 - rcu:8273127 125.561