Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02062 ATGACTCACTCATCAGAATCTTCTTCTCGTAAAACAATGATCCCTTCATTTCTCTACGGTTCTTCCCCCAAAACCCTACCTGTTATTCACCAGATCATCAATTCCGGTTCTGCTTCCGCTCCTGTTCCCGGTACGCCGCCGTCTCCTTCCATGCGTTCAACTGGATCCGCCGGATTCATGATTCCTTCTCCTAAGGAACCGTTCGGTAAGATCGAGATGTATTCGCCGGCTTTCTATGCTGCTTGTACTGCTGGTGGAATTCTTAGCTGTGGTCTTACTCATATGAGCGTTACTCCTCTTGACTTAGTCAAGTGTAATATGCAGATTGACCCTGCCAAGTACAAGAGCATCTCATCAGGTTTTGGAGTTTTGCTCAAGGAGCAAGGAGTTAAGGGCTTTTTCCGTGGATGGGTGCCAACCTTGCTTGGTTACAGTGCACAGGGTGCTTGCAAATTTGGATTCTATGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAGCCAAGTACAAGACTTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGACATTGCACTTTGCCCATTCGAGGCTGTTAAGGTCCGTGTTCAAACTCAGCCTGGTTTCGCAAGAGGTTTGGGTGATGGGCTCCCAAAATTTGTCAAGTCTGAAGGAGCTTTGGGGCTGTACAAGGGATTAGTGCCTCTATGGGGACGTCAAATTCCATACACAATGATGAAATTTGCCTCTTTTGAGACCATTGTTGAGCAGATCTATAAGCATGCCATCCCCACACCAAAGAATGAGTGCAGCAAAGGGCTGCAACTTGGTGTCAGTTTTGCTGGTGGATACATTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCCAAAGGTGCAACAGTTGGTGATGCTGTTAAGAAGTTTGGTGTGGTTGGTCTTTTCACCCGTGGTCTCCCTCTCCGTATTGTTATGATTGGAACACTTACTGGAGCCCAGTGGGGAATATATGATGCTTTCAAAGTCTTTGTGGGGCTGCCAACCACTGGTGGTGCTGCTCCTGCTCCTGTTCCTGTTCCTGTCGAGACCGAAAATGCATAA 1134 0.4665 MTHSSESSSRKTMIPSFLYGSSPKTLPVIHQIINSGSASAPVPGTPPSPSMRSTGSAGFMIPSPKEPFGKIEMYSPAFYAACTAGGILSCGLTHMSVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEQIYKHAIPTPKNECSKGLQLGVSFAGGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKFGVVGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAPVPVPVETENA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02062 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 258 IPR018108 -
Trre13g02062 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 77 161 IPR018108 -
Trre13g02062 377 Gene3D Mitochondrial carrier domain 77 355 IPR023395 -
Trre13g02062 377 SUPERFAMILY Mitochondrial carrier 80 350 IPR023395 -
Trre13g02062 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 275 354 IPR018108 -
Trre13g02062 377 FunFam Phosphate carrier protein, mitochondrial 77 355 - -
Trre13g02062 377 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 60 365 IPR044677 GO:0005315|GO:1990547
Trre13g02062 377 Pfam Mitochondrial carrier protein 80 163 IPR018108 -
Trre13g02062 377 Pfam Mitochondrial carrier protein 178 262 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02062 Trre-Chr13 17927836 17931109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02062 7 375 Chloroplast and Mitochondria Gene Families AT5G14040 79.144 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02062 K15102 - gmx:548006 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02062 13 17927836 17931109 Trre13g02062 13 17927836 17931109 ECH
Trre13g02062 13 17927836 17931109 Trre11g00886 11 7434334 7442369 PCT