Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02050 ATGGAGAGATACACGCTACCCTTACCACCACAAGGAGGAGTTCGCAATACTCTCACTACTATACCTTCTTGGTCCGAACCTCAACAAGAATCACCATCTTCATGGTCCACACCTAACTCCGAACCTAAAAACAACAATATTAACGACCAAGAAAACAACATCGCCATTGCTATTGCCATGGGTTCTACCTCTCTTCCTTTCTTCAAACCCGAACCTGATAACTTCTACAACAACAACAACAACAACAACGTTGTTAATGTTCCCTTTGTTTCAAATCCAACAACACCAACAACAATTACAGATAATTTTCTCATGCACCAAAACACAAACACCTTAGATTCAAATCCACACTCTTTCTTCCATAACAACAACAACTACTTCTTCAACAATAACAACAATAGTAACAACCCATTTGAAATGGGTTTTGAAAATGGATTCTTTATGGGAAACAACAACAACAACACTTCTAATTCCCCTGTTTTCATCGGTGGGTCACTTGAACTGAGTTCAGCTTCCGATTTTCCACCGAGTCTCGAACTCGATGCTTCAGTAACACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAACTGTCTCAACCTCAACCACAACCACAACAACAACAACCCACGACGCTCTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACTGTTGGGAACAAGAAGAAGAGAAAACTGGAGAAAAAATGGGAAGAAGAAGGAAGTGCTGGTGGTGGTGGTGGTGGTGATGTTGATGGTGATATTGATGATTTTTCTGGGTTGAATTATGATTCTGATGAAAATGGAAATGATTTGAACAATTCTAATGGAACTGTTGTTACTGGTGGAGATCAAAAGGGGAAGAAGAAGAAAGGGCTTCCTGCCAAAAATCTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGATTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGAGCTTCGATACTCGGGGATGCAGTTGACTACTTGAAGGAGCTACTGCAGCGGATTAATAATCTTCACAATGAACTCGAATCAACTCCTCCTGGTTCATTGTTGCAACCTTCTGCAAGTGCAAGTTTTCACCCATTGACACCCACTCCGCCTACCCTTCCTTGTCGAGTCAAGGAGGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCAAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTGAACATTCATATGTTTTGTACCCGCAGACCTGGACTTTTGCTTTCAACAATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATTAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCCGAGCAATGCAGAGAAGGCCAAGATGTCCTCCCCGAGCAAATTAAAGCAGTGTTGTTGGATTCAGCGGGCTACCATGATGCATTGCTTCTTGTTCCTGTTAGTAAAAAAGCCTGTGTCTGA 1500 0.4313 MERYTLPLPPQGGVRNTLTTIPSWSEPQQESPSSWSTPNSEPKNNNINDQENNIAIAIAMGSTSLPFFKPEPDNFYNNNNNNNVVNVPFVSNPTTPTTITDNFLMHQNTNTLDSNPHSFFHNNNNYFFNNNNNSNNPFEMGFENGFFMGNNNNNTSNSPVFIGGSLELSSASDFPPSLELDASVTPFSASFSMPLELSQPQPQPQQQQPTTLFQKRRGALEIPRLETVGNKKKRKLEKKWEEEGSAGGGGGGDVDGDIDDFSGLNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHDALLLVPVSKKACV 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02050 499 Coils Coil 338 358 - -
Trre13g02050 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Trre13g02050 499 MobiDBLite consensus disorder prediction 266 285 - -
Trre13g02050 499 CDD ACT_UUR-ACR-like 417 477 - -
Trre13g02050 499 FunFam BHLH transcription factor 291 359 - -
Trre13g02050 499 SMART finulus 301 350 IPR011598 GO:0046983
Trre13g02050 499 MobiDBLite consensus disorder prediction 219 244 - -
Trre13g02050 499 MobiDBLite consensus disorder prediction 194 297 - -
Trre13g02050 499 MobiDBLite consensus disorder prediction 194 214 - -
Trre13g02050 499 CDD bHLH_AtAMS_like 298 362 - -
Trre13g02050 499 Gene3D - 287 358 IPR036638 GO:0046983
Trre13g02050 499 MobiDBLite consensus disorder prediction 1 48 - -
Trre13g02050 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 364 IPR036638 GO:0046983
Trre13g02050 499 MobiDBLite consensus disorder prediction 12 48 - -
Trre13g02050 499 Pfam Helix-loop-helix DNA-binding domain 302 344 IPR011598 GO:0046983
Trre13g02050 499 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 170 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02050 Trre-Chr13 17751576 17754413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02050 125 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.865 5.19e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g02050 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02050 - - psat:127126761 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02050 13 17751576 17754413 Trre13g02050 13 17751576 17754413 ECH